Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EXA06_RS18585 Genome accession   NZ_CP035822
Coordinates   3841813..3842349 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain WS4437A-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3836813..3847349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA06_RS18565 aphA 3837102..3837815 (+) 714 WP_001226928.1 acid phosphatase AphA -
  EXA06_RS18570 yjbQ 3837926..3838342 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EXA06_RS18575 yjbR 3838346..3838702 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  EXA06_RS18580 uvrA 3838737..3841559 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  EXA06_RS18585 ssb 3841813..3842349 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EXA06_RS18590 yjcB 3842448..3842729 (-) 282 WP_001295689.1 YjcB family protein -
  EXA06_RS18595 pdeC 3843159..3844745 (+) 1587 Protein_3647 c-di-GMP phosphodiesterase PdeC -
  EXA06_RS18600 soxS 3844748..3845071 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  EXA06_RS18605 soxR 3845157..3845621 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=305339 EXA06_RS18585 WP_000168305.1 3841813..3842349(+) (ssb) [Escherichia coli strain WS4437A-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=305339 EXA06_RS18585 WP_000168305.1 3841813..3842349(+) (ssb) [Escherichia coli strain WS4437A-1]
ATGGCCAGCAGAGGCGTAAATAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489