Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EXA07_RS15085 Genome accession   NZ_CP035819
Coordinates   3133601..3134137 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain WS3294A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3128601..3139137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA07_RS15065 aphA 3128890..3129603 (+) 714 WP_001315956.1 acid phosphatase AphA -
  EXA07_RS15070 yjbQ 3129714..3130130 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EXA07_RS15075 yjbR 3130134..3130490 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  EXA07_RS15080 uvrA 3130525..3133347 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  EXA07_RS15085 ssb 3133601..3134137 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EXA07_RS15090 yjcB 3134236..3134517 (-) 282 WP_001295689.1 YjcB family protein -
  EXA07_RS15095 pdeC 3134947..3136533 (+) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  EXA07_RS15100 soxS 3136536..3136859 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  EXA07_RS15105 soxR 3136945..3137409 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=305250 EXA07_RS15085 WP_000168305.1 3133601..3134137(+) (ssb) [Escherichia coli strain WS3294A]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=305250 EXA07_RS15085 WP_000168305.1 3133601..3134137(+) (ssb) [Escherichia coli strain WS3294A]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489