Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   VCD_RS11380 Genome accession   NC_012668
Coordinates   2438218..2438805 (-) Length   195 a.a.
NCBI ID   WP_001005366.1    Uniprot ID   -
Organism   Vibrio cholerae MJ-1236     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2433218..2443805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCD_RS11360 (VCD_003185) - 2433446..2434711 (-) 1266 WP_000835928.1 YdgA family protein -
  VCD_RS11365 (VCD_003186) - 2434934..2436889 (+) 1956 WP_001082992.1 ATP-binding protein -
  VCD_RS11370 (VCD_003187) - 2436886..2437383 (+) 498 WP_001031964.1 response regulator -
  VCD_RS11375 (VCD_003188) - 2437574..2438122 (+) 549 WP_001232641.1 hypothetical protein -
  VCD_RS11380 (VCD_003189) tfoX 2438218..2438805 (-) 588 WP_001005366.1 TfoX/Sxy family DNA transformation protein Regulator
  VCD_RS11385 (VCD_003190) - 2439183..2440103 (+) 921 WP_000019000.1 HDOD domain-containing protein -
  VCD_RS11390 (VCD_003191) - 2440124..2441029 (+) 906 WP_000948497.1 lysine exporter LysO family protein -
  VCD_RS11395 (VCD_003192) - 2441218..2441727 (+) 510 WP_000826868.1 hypothetical protein -
  VCD_RS11400 (VCD_003193) panP 2441837..2443483 (+) 1647 WP_000253201.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22816.03 Da        Isoelectric Point: 6.9718

>NTDB_id=30523 VCD_RS11380 WP_001005366.1 2438218..2438805(-) (tfoX) [Vibrio cholerae MJ-1236]
MNEQQFFDYVTKFGAYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELLALGCEKYRHVKKQTTATVNYYDITE
LYEQHHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVRQAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=30523 VCD_RS11380 WP_001005366.1 2438218..2438805(-) (tfoX) [Vibrio cholerae MJ-1236]
ATGAATGAGCAACAGTTTTTCGACTACGTAACTAAGTTTGGCGCCTACCAAAAACGCTCGATGTTTGGTGGTATTGGCTT
GTTTCAACACGACGCTATGTATGTGTTGGTCAGTGAAGACCGCATTTTTGTGCGTGGTGGAGAAGAGCTCGACCCTGAGC
TCTTGGCCTTAGGGTGCGAGAAATATCGCCATGTTAAAAAACAGACAACGGCAACCGTAAACTATTACGACATCACTGAA
CTGTATGAGCAACATCACCCTGAGCTAGACTCGATTATTGAACGCTCGATTCAGTTTTCTGTGAATCAGCGGGAATTTCA
ACGCTCAGCAGCCAGTCGTCGTCTACGGGATTTACCCAATATGCAACTGACTTTGGAGCGTATGGTAAAAAAAGCGGGCA
TTGACGATGTGGAAACTTTTATGAGCCTCGGTGCGCCAGAAGTGTTTAATAAGGTGCGTCAAGCTTATGGAAGTGATGTC
GATGTAAAACTACTGTGGAAGTTTGCGGGTGCGATTGAAGGCATTCACTGGAAACTGCTGCAAGAGCCGCGTAAGCGCCA
ACTGTTAGAAAGTTGTCAGCAGCGTTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

100

100

1
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

100

100

1
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

100

100

1
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

100

100

1
  tfoX Vibrio cholerae strain A1552

100

100

1
  tfoX Vibrio campbellii strain DS40M4

69.43

98.974

0.687
  tfoX Vibrio parahaemolyticus RIMD 2210633

68.394

98.974

0.677
  tfoX Aliivibrio fischeri ES114

59.043

96.41

0.569

Multiple sequence alignment