Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   DV445_RS04325 Genome accession   NZ_CP031255
Coordinates   869562..871709 (+) Length   715 a.a.
NCBI ID   WP_199903599.1    Uniprot ID   -
Organism   Neisseria elongata strain M15910     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 864562..876709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV445_RS04305 pilM 866606..867721 (+) 1116 WP_234405201.1 type IV pilus assembly protein PilM -
  DV445_RS04310 - 867724..868377 (+) 654 WP_107854206.1 PilN domain-containing protein -
  DV445_RS04315 - 868379..869005 (+) 627 WP_049249696.1 type 4a pilus biogenesis protein PilO -
  DV445_RS04320 - 869024..869542 (+) 519 WP_049249614.1 pilus assembly protein PilP -
  DV445_RS04325 pilQ 869562..871709 (+) 2148 WP_199903599.1 type IV pilus secretin PilQ Machinery gene
  DV445_RS04330 - 872579..874456 (+) 1878 WP_107971109.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  DV445_RS04335 - 874524..875666 (-) 1143 WP_107854235.1 extracellular solute-binding protein -
  DV445_RS04340 rpsT 875945..876208 (+) 264 WP_114921755.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 715 a.a.        Molecular weight: 78237.09 Da        Isoelectric Point: 9.7035

>NTDB_id=305125 DV445_RS04325 WP_199903599.1 869562..871709(+) (pilQ) [Neisseria elongata strain M15910]
MKKLVDVKFFPILGMALAVQAVFAGNITDINVSTLPNNQKIVKVKFDKDTVLPSNSMINEPSSRIALDFPATGVILQQST
FEYVDSLLSQVTAVKNGNNARVLLGLNRLGQYKAEVKGKEVWIYVNEVVSSSHTTSSLQSINSKISSSEASVVTVDFKKS
GKSNGSIEIMTGKFQGKPDIKQNNSNLTITLKNYPLPVQAQRNLDVSDFSTPVRNIVLKRIGNDTQIVIKNQGAWAHNIK
TMNDRMVVDITHKSLIESSGLPSNQNKSFKGNKVSLDFQDVDVRTVLQILAKESGMNIVASDSVTGKMTLTLKDVPWDQA
LDLVMQARNLDMRKTGNVINVAPREELLAKDKAILTQQREIDELGPLYSRTFQLKYKNVEEFRKILKLDENNGSNNSNNN
NSRTILSNRGSALIDPATNTLVITDNTFVLQKFEKLIAELDVPARQVMVEARIVEAEDGFSRQLGVKFGYAGSNGKNSWG
SNWANAGANRNSYVDKQRTLANWSRNPSQDIPALPAWTVDPNVNLPTAAATSSIALVHALSSGALGLELSAQQAQNKLKI
VSTPRVLTQDRKEAIIESGTEIPYQEASSSGATSTSFKKAVLGMTVTPNITPDGQIIMDIKINKDSVNPDCGATEPCINT
QRLNTNVMVEDGGTLILGGIYREENSEGVSKVPLLGDIPVVGNLFKSKTRSDKKTELLIFITPRIVDNIGSNLRY

Nucleotide


Download         Length: 2148 bp        

>NTDB_id=305125 DV445_RS04325 WP_199903599.1 869562..871709(+) (pilQ) [Neisseria elongata strain M15910]
ATGAAAAAGTTAGTAGATGTTAAATTTTTTCCAATTTTAGGAATGGCATTGGCTGTGCAGGCTGTTTTTGCAGGTAATAT
TACTGATATTAATGTTTCAACTTTGCCAAATAATCAGAAGATTGTTAAAGTTAAATTCGATAAAGATACAGTTTTGCCGT
CAAATTCGATGATAAATGAACCTTCTTCTCGTATTGCTTTAGATTTTCCAGCTACTGGAGTGATATTGCAACAATCTACA
TTTGAGTATGTAGATTCATTATTAAGCCAGGTTACGGCAGTCAAAAATGGAAACAATGCTCGTGTATTGTTGGGTCTAAA
CAGATTAGGACAGTATAAAGCAGAGGTTAAAGGTAAAGAAGTTTGGATTTATGTTAATGAGGTGGTATCTTCGAGTCATA
CGACTTCAAGCCTTCAAAGTATAAATAGTAAAATTTCAAGTTCTGAAGCTTCTGTAGTTACAGTTGATTTTAAAAAATCA
GGAAAATCAAACGGTAGCATTGAAATTATGACTGGCAAATTTCAGGGTAAGCCAGACATAAAACAAAACAATAGCAACTT
AACAATTACATTGAAAAATTATCCTTTACCTGTGCAAGCTCAGCGTAATTTGGATGTAAGTGATTTTAGCACTCCTGTTC
GTAATATTGTCTTAAAACGAATTGGCAACGATACCCAAATAGTTATTAAAAATCAGGGGGCATGGGCTCATAATATTAAA
ACAATGAATGATCGAATGGTTGTTGACATAACCCATAAATCGTTAATTGAGAGTTCAGGTTTGCCTTCTAATCAAAATAA
ATCGTTTAAAGGCAATAAAGTTTCTTTAGATTTTCAAGATGTTGATGTCCGTACAGTATTACAGATTCTAGCTAAAGAGT
CTGGCATGAATATTGTAGCCAGTGACAGTGTTACAGGGAAAATGACATTGACTCTTAAAGATGTTCCTTGGGATCAGGCA
CTAGATTTAGTGATGCAGGCTCGTAATTTAGATATGAGAAAAACAGGTAATGTTATTAATGTAGCGCCTAGAGAAGAGTT
ATTGGCTAAAGATAAAGCGATTCTAACTCAACAGAGAGAAATTGATGAGTTGGGTCCTTTATATTCTAGAACATTCCAAT
TGAAATATAAAAATGTAGAGGAATTCCGTAAAATACTAAAATTAGATGAAAACAATGGTAGCAACAATAGTAATAACAAT
AATAGCAGAACGATTCTGAGTAATCGGGGTAGTGCGCTAATTGATCCTGCTACTAACACTTTAGTTATTACTGATAATAC
CTTTGTACTGCAAAAATTTGAAAAATTAATTGCAGAATTAGATGTTCCCGCACGGCAGGTGATGGTTGAGGCTAGAATTG
TGGAGGCGGAAGACGGCTTCTCACGTCAATTGGGTGTTAAATTCGGATATGCAGGTTCAAATGGTAAAAATAGTTGGGGG
AGTAACTGGGCTAATGCTGGTGCTAACCGTAATAGTTATGTAGATAAGCAAAGAACTCTTGCAAATTGGAGTAGGAATCC
ATCCCAAGATATTCCAGCATTGCCAGCATGGACTGTTGACCCTAATGTGAATTTACCTACAGCTGCTGCTACGTCAAGTA
TTGCTTTGGTTCATGCGTTATCTTCTGGTGCCCTGGGGTTAGAGCTGTCTGCACAACAGGCGCAGAATAAGTTGAAAATA
GTTTCAACTCCTCGTGTTTTAACGCAGGATCGCAAAGAGGCGATAATTGAATCGGGTACAGAAATTCCGTATCAAGAAGC
CTCTTCAAGTGGTGCTACATCTACGTCATTTAAGAAAGCAGTATTGGGTATGACTGTAACGCCTAATATTACTCCCGATG
GTCAGATAATTATGGATATTAAGATCAATAAAGATTCAGTAAATCCAGATTGTGGGGCTACCGAACCTTGTATAAATACT
CAGCGTTTAAATACCAATGTTATGGTAGAAGATGGTGGAACGCTAATTTTGGGTGGTATTTATCGAGAGGAAAACTCAGA
AGGCGTAAGTAAAGTTCCATTATTAGGCGATATTCCGGTTGTTGGAAACTTGTTTAAGTCGAAAACTAGATCTGATAAGA
AAACTGAACTCTTGATTTTCATTACTCCCCGTATTGTTGATAATATTGGTAGCAATTTGAGATATTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(370-446)

Bacterial type II and III secretion system protein (Secretin)

(552-707)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

52.368

100

0.541
  pilQ Neisseria meningitidis MC58

55.401

80.28

0.445
  pilQ Neisseria meningitidis M1080

55.401

80.28

0.445

Multiple sequence alignment