Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   DV401_RS04790 Genome accession   NZ_CP031254
Coordinates   938509..939201 (+) Length   230 a.a.
NCBI ID   WP_114877327.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M25588     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 933509..944201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV401_RS04770 ampD 934792..935343 (-) 552 WP_071162800.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  DV401_RS04775 pilA 935458..935907 (+) 450 WP_103708055.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DV401_RS04780 pilB 935904..937298 (+) 1395 WP_114877323.1 GspE/PulE family protein Machinery gene
  DV401_RS04785 pilC 937295..938512 (+) 1218 WP_114877325.1 type II secretion system F family protein Machinery gene
  DV401_RS04790 pilD 938509..939201 (+) 693 WP_114877327.1 prepilin peptidase Machinery gene
  DV401_RS04795 rho 939255..940517 (-) 1263 WP_005666690.1 transcription termination factor Rho -
  DV401_RS04800 metJ 940752..941069 (+) 318 WP_005634287.1 met regulon transcriptional regulator MetJ -
  DV401_RS04805 cueR 941083..941469 (-) 387 WP_114877329.1 Cu(I)-responsive transcriptional regulator -
  DV401_RS04810 - 941546..941752 (+) 207 WP_005654130.1 heavy-metal-associated domain-containing protein -
  DV401_RS04815 - 941727..943898 (+) 2172 WP_114877331.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26632.62 Da        Isoelectric Point: 8.8544

>NTDB_id=305107 DV401_RS04790 WP_114877327.1 938509..939201(+) (pilD) [Haemophilus influenzae strain M25588]
MIYFTMFLLGGILGIALWFYLSGFITRLQQEIYATYVELFPQNFLSFQPSVSSIQQKKCGHILRYFLSVGVGFIFLQIAF
KDSIFTVWFGLTLLILWAISYLDWHYQLISTTLCLWLLTIGLFGADNNFSLLTLSESIKSAASFFIVFYAIYWIAKFYYG
KEAFGRGDYWLAMALGSFIHLETLPHFLLLASVLGICFSLIHKKKKEFIPFAPFMNLSAVIIYFVKYYGY

Nucleotide


Download         Length: 693 bp        

>NTDB_id=305107 DV401_RS04790 WP_114877327.1 938509..939201(+) (pilD) [Haemophilus influenzae strain M25588]
ATGATTTACTTCACAATGTTTTTATTAGGCGGCATCTTAGGGATCGCATTGTGGTTCTACCTATCTGGTTTTATTACCCG
TTTACAGCAAGAGATTTATGCGACTTACGTTGAATTATTTCCACAAAACTTTCTGTCATTTCAGCCTAGCGTTTCCTCTA
TTCAACAAAAAAAGTGCGGTCATATTTTGAGGTATTTTTTAAGTGTTGGGGTAGGATTTATATTTTTACAAATTGCCTTC
AAAGATTCTATTTTTACTGTATGGTTCGGACTCACACTTCTTATCCTTTGGGCAATCAGTTATCTTGATTGGCACTATCA
ACTTATTTCTACTACACTCTGTTTATGGCTACTTACAATCGGTTTATTTGGGGCAGACAATAATTTTTCATTGCTTACGT
TATCTGAAAGCATAAAAAGTGCGGCAAGTTTTTTTATTGTTTTCTACGCAATCTATTGGATTGCAAAATTCTATTACGGA
AAAGAAGCCTTTGGACGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCATTTAGAAACCTTACCGCACTT
TTTATTATTAGCCTCAGTTCTTGGAATATGTTTTTCGCTTATTCATAAAAAGAAAAAAGAATTTATACCTTTTGCCCCTT
TTATGAACTTATCAGCTGTCATAATTTATTTCGTCAAATATTACGGATATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

92.174

100

0.922
  pilD Haemophilus influenzae Rd KW20

91.739

100

0.917

Multiple sequence alignment