Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   DV401_RS04115 Genome accession   NZ_CP031254
Coordinates   811748..812161 (+) Length   137 a.a.
NCBI ID   WP_005693727.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M25588     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 806748..817161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV401_RS04095 - 807237..809831 (-) 2595 WP_071162875.1 penicillin-binding protein 1A -
  DV401_RS04100 comA 809929..810726 (+) 798 WP_071162874.1 competence protein ComA Machinery gene
  DV401_RS04105 comB 810727..811233 (+) 507 WP_114877297.1 competence protein ComB Machinery gene
  DV401_RS04110 comC 811230..811751 (+) 522 WP_048951462.1 competence protein ComC Machinery gene
  DV401_RS04115 comD 811748..812161 (+) 414 WP_005693727.1 pilus assembly protein PilP Machinery gene
  DV401_RS04120 comE 812171..813508 (+) 1338 WP_071162872.1 type IV pilus secretin PilQ family protein Machinery gene
  DV401_RS04125 - 813521..814207 (+) 687 WP_071162871.1 ComF family protein -
  DV401_RS04130 nfuA 814283..814879 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  DV401_RS04135 nudC 814947..815741 (+) 795 WP_071162870.1 NAD(+) diphosphatase -
  DV401_RS04140 - 815777..816367 (+) 591 WP_071162869.1 YjaG family protein -
  DV401_RS04145 - 816507..816779 (+) 273 WP_005630954.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15681.82 Da        Isoelectric Point: 4.5625

>NTDB_id=305098 DV401_RS04115 WP_005693727.1 811748..812161(+) (comD) [Haemophilus influenzae strain M25588]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=305098 DV401_RS04115 WP_005693727.1 811748..812161(+) (comD) [Haemophilus influenzae strain M25588]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAACAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Haemophilus influenzae Rd KW20

100

100

1
  comD Haemophilus influenzae 86-028NP

99.27

100

0.993

Multiple sequence alignment