Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DV401_RS04100 Genome accession   NZ_CP031254
Coordinates   809929..810726 (+) Length   265 a.a.
NCBI ID   WP_071162874.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M25588     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 804929..815726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV401_RS04080 recR 805102..805704 (-) 603 WP_005626527.1 recombination mediator RecR -
  DV401_RS04085 - 805837..806166 (-) 330 WP_071162877.1 YbaB/EbfC family nucleoid-associated protein -
  DV401_RS04090 - 806319..807164 (-) 846 WP_071162876.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  DV401_RS04095 - 807237..809831 (-) 2595 WP_071162875.1 penicillin-binding protein 1A -
  DV401_RS04100 comA 809929..810726 (+) 798 WP_071162874.1 competence protein ComA Machinery gene
  DV401_RS04105 comB 810727..811233 (+) 507 WP_114877297.1 competence protein ComB Machinery gene
  DV401_RS04110 comC 811230..811751 (+) 522 WP_048951462.1 competence protein ComC Machinery gene
  DV401_RS04115 comD 811748..812161 (+) 414 WP_005693727.1 pilus assembly protein PilP Machinery gene
  DV401_RS04120 comE 812171..813508 (+) 1338 WP_071162872.1 type IV pilus secretin PilQ family protein Machinery gene
  DV401_RS04125 - 813521..814207 (+) 687 WP_071162871.1 ComF family protein -
  DV401_RS04130 nfuA 814283..814879 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31527.87 Da        Isoelectric Point: 5.9495

>NTDB_id=305095 DV401_RS04100 WP_071162874.1 809929..810726(+) (comA) [Haemophilus influenzae strain M25588]
MQFSLKNYRTLQIGIHRKQGYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSSAQTYLQDFQPFNINILDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLLENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=305095 DV401_RS04100 WP_071162874.1 809929..810726(+) (comA) [Haemophilus influenzae strain M25588]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTCGAACAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
GCGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAATATTAATATATTGGATGTTGCGTCAAATGCTGTTTTGCGTGCA
TTTCAATATCTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGGCAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACTAGAAAATTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCACTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

99.245

100

0.992
  comA Haemophilus influenzae 86-028NP

96.226

100

0.962

Multiple sequence alignment