Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | DV401_RS04105 | Genome accession | NZ_CP031254 |
| Coordinates | 810727..811233 (+) | Length | 168 a.a. |
| NCBI ID | WP_114877297.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain M25588 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 805727..816233
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DV401_RS04085 | - | 805837..806166 (-) | 330 | WP_071162877.1 | YbaB/EbfC family nucleoid-associated protein | - |
| DV401_RS04090 | - | 806319..807164 (-) | 846 | WP_071162876.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| DV401_RS04095 | - | 807237..809831 (-) | 2595 | WP_071162875.1 | penicillin-binding protein 1A | - |
| DV401_RS04100 | comA | 809929..810726 (+) | 798 | WP_071162874.1 | competence protein ComA | Machinery gene |
| DV401_RS04105 | comB | 810727..811233 (+) | 507 | WP_114877297.1 | competence protein ComB | Machinery gene |
| DV401_RS04110 | comC | 811230..811751 (+) | 522 | WP_048951462.1 | competence protein ComC | Machinery gene |
| DV401_RS04115 | comD | 811748..812161 (+) | 414 | WP_005693727.1 | pilus assembly protein PilP | Machinery gene |
| DV401_RS04120 | comE | 812171..813508 (+) | 1338 | WP_071162872.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| DV401_RS04125 | - | 813521..814207 (+) | 687 | WP_071162871.1 | ComF family protein | - |
| DV401_RS04130 | nfuA | 814283..814879 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| DV401_RS04135 | nudC | 814947..815741 (+) | 795 | WP_071162870.1 | NAD(+) diphosphatase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19697.62 Da Isoelectric Point: 7.4681
>NTDB_id=305096 DV401_RS04105 WP_114877297.1 810727..811233(+) (comB) [Haemophilus influenzae strain M25588]
MSMNLLPWSTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKLFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSILNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
MSMNLLPWSTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKLFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSILNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
Nucleotide
Download Length: 507 bp
>NTDB_id=305096 DV401_RS04105 WP_114877297.1 810727..811233(+) (comB) [Haemophilus influenzae strain M25588]
ATGTCGATGAATTTATTGCCTTGGAGTACTTATCAACATCAAAAGCGTTTACGCCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTTGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCTCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCACAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGAGTACTTATCAACATCAAAAGCGTTTACGCCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTTGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCTCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCACAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
97.619 |
100 |
0.976 |
| comB | Haemophilus influenzae Rd KW20 |
97.619 |
100 |
0.976 |