Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   DV311_RS12135 Genome accession   NZ_CP031253
Coordinates   2167033..2167482 (+) Length   149 a.a.
NCBI ID   WP_114936156.1    Uniprot ID   -
Organism   Neisseria lactamica strain M17106     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2160941..2169306 2167033..2167482 within 0


Gene organization within MGE regions


Location: 2160941..2169306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS12100 - 2160941..2161111 (+) 171 WP_162817081.1 hypothetical protein -
  DV311_RS12130 - 2166485..2166950 (+) 466 Protein_2156 helix-hairpin-helix domain-containing protein -
  DV311_RS12135 comP 2167033..2167482 (+) 450 WP_114936156.1 type IV pilin protein Machinery gene
  DV311_RS12140 - 2167489..2167857 (-) 369 WP_003710619.1 5'-nucleotidase -
  DV311_RS12145 - 2168379..2168717 (+) 339 WP_114936005.1 hypothetical protein -
  DV311_RS12150 - 2168863..2169306 (+) 444 WP_114936006.1 hypothetical protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16820.74 Da        Isoelectric Point: 9.6170

>NTDB_id=305077 DV311_RS12135 WP_114936156.1 2167033..2167482(+) (comP) [Neisseria lactamica strain M17106]
MADNRGFTLLELISVVLILSVLALIVYPSYRNYVEKAKINAVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENSVTFICKKSASSCDDGLDYFKGNDKDCKLLK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=305077 DV311_RS12135 WP_114936156.1 2167033..2167482(+) (comP) [Neisseria lactamica strain M17106]
ATGGCTGATAATCGGGGATTTACGCTGCTTGAGTTAATATCGGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATGTTGAGAAAGCAAAGATAAATGCAGTGCGGGCGGCTTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGGTTTAAACAAACATCTACTAAATGGCCAAGTTTGCCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATTGCGCGTGGGGCTTTAGATAGTAAGTTCATGTTAAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAGAATTCGGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGCGATGACG
GACTAGATTATTTTAAAGGTAACGATAAGGACTGCAAGTTACTTAAGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria gonorrhoeae MS11

97.315

100

0.973
  comP Neisseria meningitidis 8013

96.644

100

0.966
  comP Neisseria subflava NJ9703

48.966

97.315

0.477

Multiple sequence alignment