Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   DV311_RS09260 Genome accession   NZ_CP031253
Coordinates   1690793..1691653 (+) Length   286 a.a.
NCBI ID   WP_114935776.1    Uniprot ID   -
Organism   Neisseria lactamica strain M17106     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1685793..1696653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS09240 dapD 1686459..1687280 (-) 822 WP_002224875.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  DV311_RS09245 - 1687290..1687520 (-) 231 WP_025458514.1 hypothetical protein -
  DV311_RS09250 pgi 1687490..1689133 (-) 1644 WP_114935775.1 glucose-6-phosphate isomerase -
  DV311_RS09255 pilG 1689487..1690719 (+) 1233 WP_003710974.1 type 4 pilus assembly protein PilG Machinery gene
  DV311_RS09260 pilD 1690793..1691653 (+) 861 WP_114935776.1 prepilin peptidase Machinery gene
  DV311_RS09265 coaE 1691655..1692287 (+) 633 WP_114935777.1 dephospho-CoA kinase -
  DV311_RS09270 - 1692280..1692489 (+) 210 WP_114935778.1 DNA gyrase inhibitor YacG -
  DV311_RS09275 pilF 1692574..1694250 (-) 1677 WP_114935779.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DV311_RS09290 - 1694882..1695328 (-) 447 WP_003710982.1 DUF441 domain-containing protein -
  DV311_RS09295 - 1695333..1696307 (-) 975 WP_003710984.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31342.46 Da        Isoelectric Point: 8.9562

>NTDB_id=305068 DV311_RS09260 WP_114935776.1 1690793..1691653(+) (pilD) [Neisseria lactamica strain M17106]
MFALSVLPPFAVPLAAVLGLLVGSFLNVVIYRVPVMMERGWTVFAKEHLNLPLTDEESRTFNLMKPDSCCPKCRVPIRAW
QNIPIASYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSLWLLCAVYKLLTRKTGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVL

Nucleotide


Download         Length: 861 bp        

>NTDB_id=305068 DV311_RS09260 WP_114935776.1 1690793..1691653(+) (pilD) [Neisseria lactamica strain M17106]
ATGTTTGCTTTATCTGTACTGCCTCCGTTTGCCGTACCTTTGGCAGCGGTGTTGGGACTGCTGGTCGGCAGTTTCCTGAA
TGTCGTCATTTACCGCGTACCCGTGATGATGGAGCGCGGTTGGACGGTATTTGCCAAAGAACATTTAAACCTGCCGCTGA
CCGATGAGGAAAGCCGCACCTTCAACCTGATGAAGCCGGATTCCTGCTGCCCCAAATGCCGCGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGCCAGCTATCTGCTCCTGCGCGGCAAATGCGCCTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTTGCCTGGCAATACGGCTGGTCTTGGATTACGCTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACACTGCCC
TTGATTTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATGGTTCATTATGGCTCTTATGTGCAGTGTATAAACTGCTCACAAGAAAAACCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCGCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCAGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGTTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGCTGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(134-242)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

97.193

99.65

0.969
  pilD Vibrio campbellii strain DS40M4

44.251

100

0.444
  pilD Vibrio cholerae strain A1552

46.014

96.503

0.444
  pilD Acinetobacter baumannii D1279779

47.727

92.308

0.441
  pilD Acinetobacter nosocomialis M2

47.727

92.308

0.441

Multiple sequence alignment