Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PMI_RS13540 Genome accession   NC_010554
Coordinates   3004258..3004782 (+) Length   174 a.a.
NCBI ID   WP_004249162.1    Uniprot ID   A0A1Z1SRL1
Organism   Proteus mirabilis HI4320     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2999258..3009782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMI_RS13535 (PMI2746) uvrA 3001171..3004005 (-) 2835 WP_004249165.1 excinuclease ABC subunit UvrA -
  PMI_RS13540 (PMI2747) ssb 3004258..3004782 (+) 525 WP_004249162.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PMI_RS13545 (PMI2748) zur 3005138..3005668 (+) 531 WP_004245904.1 zinc uptake transcriptional repressor Zur -
  PMI_RS13550 (PMI2749) lexA 3005857..3006468 (-) 612 WP_004245906.1 transcriptional repressor LexA -
  PMI_RS13555 (PMI2750) - 3006596..3006967 (-) 372 WP_004245908.1 diacylglycerol kinase -
  PMI_RS13560 (PMI2751) plsB 3007098..3009581 (+) 2484 WP_012368492.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18830.90 Da        Isoelectric Point: 4.9468

>NTDB_id=30505 PMI_RS13540 WP_004249162.1 3004258..3004782(+) (ssb) [Proteus mirabilis HI4320]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=30505 PMI_RS13540 WP_004249162.1 3004258..3004782(+) (ssb) [Proteus mirabilis HI4320]
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTAGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGTAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTGAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGCCAAGGCGGTTGGGGTCAACCTC
AGCAACCACAAGCATCACAACAGTTTAGTGGTGGCGCACCATCTCGCCCAGCACAACAACCCGCAGCGGCACCAGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z1SRL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.892

100

0.764
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.603
  ssb Neisseria meningitidis MC58

48.023

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.489

Multiple sequence alignment