Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV114_RS09760 Genome accession   NZ_CP031251
Coordinates   2017351..2017638 (-) Length   95 a.a.
NCBI ID   WP_114926434.1    Uniprot ID   -
Organism   Neisseria subflava strain M18660     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2012351..2022638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS09735 - 2013370..2014035 (-) 666 WP_107697235.1 hypothetical protein -
  DV114_RS09740 pyrI 2014228..2014686 (-) 459 WP_107697236.1 aspartate carbamoyltransferase regulatory subunit -
  DV114_RS09745 pyrB 2014697..2015617 (-) 921 WP_114926433.1 aspartate carbamoyltransferase -
  DV114_RS09755 comP 2016674..2017168 (-) 495 WP_205317569.1 type IV pilin protein Machinery gene
  DV114_RS09760 comE 2017351..2017638 (-) 288 WP_114926434.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9713.41 Da        Isoelectric Point: 10.4923

>NTDB_id=305001 DV114_RS09760 WP_114926434.1 2017351..2017638(-) (comE) [Neisseria subflava strain M18660]
MKKILFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKAIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=305001 DV114_RS09760 WP_114926434.1 2017351..2017638(-) (comE) [Neisseria subflava strain M18660]
ATGAAGAAAATTTTATTTGGTGCATTTGCTGCTGTTTGTGCAGCATTCTCTTTAGCCGCCGTGAACATCAATACCGCGTC
TTCTGCCGAACTGGAGGCCTTGCCGGGTATCGGTCCGGCTAAGGCGAAAGCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTTAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCCCAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

63.636

100

0.663
  comE Neisseria gonorrhoeae MS11

63.636

100

0.663
  comE Neisseria gonorrhoeae MS11

63.636

100

0.663
  comE Neisseria gonorrhoeae MS11

63.636

100

0.663
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.556

85.263

0.474

Multiple sequence alignment