Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   DV114_RS09755 Genome accession   NZ_CP031251
Coordinates   2016674..2017168 (-) Length   164 a.a.
NCBI ID   WP_205317569.1    Uniprot ID   -
Organism   Neisseria subflava strain M18660     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2011674..2022168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS11440 - 2012079..2012207 (-) 129 WP_269208304.1 hypothetical protein -
  DV114_RS09730 - 2012231..2013094 (-) 864 WP_070836923.1 GNAT family N-acetyltransferase -
  DV114_RS09735 - 2013370..2014035 (-) 666 WP_107697235.1 hypothetical protein -
  DV114_RS09740 pyrI 2014228..2014686 (-) 459 WP_107697236.1 aspartate carbamoyltransferase regulatory subunit -
  DV114_RS09745 pyrB 2014697..2015617 (-) 921 WP_114926433.1 aspartate carbamoyltransferase -
  DV114_RS09755 comP 2016674..2017168 (-) 495 WP_205317569.1 type IV pilin protein Machinery gene
  DV114_RS09760 comE 2017351..2017638 (-) 288 WP_114926434.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17972.05 Da        Isoelectric Point: 10.1982

>NTDB_id=305000 DV114_RS09755 WP_205317569.1 2016674..2017168(-) (comP) [Neisseria subflava strain M18660]
MYLKTFVGKRNGATVQRGYSLIQLLVVILLVSILATAAFTAYRESVRSANLRAAHAALLENARFMEQFYAKKGSFKLTST
KWPELPVKEAGGFCIRMSGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGKGSCTDGEEIFRGNDAECK
PFMG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=305000 DV114_RS09755 WP_205317569.1 2016674..2017168(-) (comP) [Neisseria subflava strain M18660]
ATGTACTTAAAAACATTTGTTGGCAAACGGAATGGAGCAACTGTGCAGAGGGGGTACTCTTTGATACAGCTGTTGGTGGT
GATACTGCTGGTTTCGATCTTGGCAACGGCGGCCTTTACGGCCTATCGGGAGTCAGTCCGCTCGGCCAACCTGCGTGCAG
CGCATGCCGCGCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTACGCGAAAAAGGGCAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAACTGCCGGTGAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGTCAGGCTAAGGGCATCCTGGAGGG
TAAGTTTACCTTGAAGGCGGTGGCGCTGGATAGGGAAGCGGAGCCGAGGGTGCTGCGTTTGAACGAGTCGCTGACGGCGG
TGGTATGCGGGAAGATGAAGGGGAAGGGCAGCTGTACGGACGGTGAGGAGATATTTAGGGGCAATGATGCGGAGTGTAAG
CCTTTTATGGGGTGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(41-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

93.902

100

0.939
  comP Neisseria meningitidis 8013

50.336

90.854

0.457
  comP Neisseria gonorrhoeae MS11

50.34

89.634

0.451

Multiple sequence alignment