Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV114_RS08985 Genome accession   NZ_CP031251
Coordinates   1878340..1878627 (-) Length   95 a.a.
NCBI ID   WP_004520163.1    Uniprot ID   A0AAF1BTY2
Organism   Neisseria subflava strain M18660     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1873340..1883627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS08965 - 1873613..1873876 (-) 264 WP_049332348.1 PAAR domain-containing protein -
  DV114_RS08970 - 1873925..1875070 (-) 1146 WP_107697373.1 hypothetical protein -
  DV114_RS08975 uvrB 1875420..1877447 (-) 2028 WP_101756426.1 excinuclease ABC subunit UvrB -
  DV114_RS08980 comP 1877663..1878157 (-) 495 WP_199903543.1 type IV pilin protein Machinery gene
  DV114_RS08985 comE 1878340..1878627 (-) 288 WP_004520163.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9791.48 Da        Isoelectric Point: 10.4923

>NTDB_id=304997 DV114_RS08985 WP_004520163.1 1878340..1878627(-) (comE) [Neisseria subflava strain M18660]
MKKFLFGVFAAVCTAFSLAAVNVNTASSAELEALPGIGPAKAKAIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=304997 DV114_RS08985 WP_004520163.1 1878340..1878627(-) (comE) [Neisseria subflava strain M18660]
ATGAAGAAATTTTTATTTGGTGTCTTTGCCGCCGTGTGTACGGCATTCTCTTTGGCTGCCGTGAATGTCAATACGGCCTC
TTCTGCCGAGCTGGAGGCATTGCCGGGTATCGGCCCGGCTAAGGCGAAAGCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCTGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.878

86.316

0.474

Multiple sequence alignment