Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   DV114_RS08980 Genome accession   NZ_CP031251
Coordinates   1877663..1878157 (-) Length   164 a.a.
NCBI ID   WP_199903543.1    Uniprot ID   -
Organism   Neisseria subflava strain M18660     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1872663..1883157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS08965 - 1873613..1873876 (-) 264 WP_049332348.1 PAAR domain-containing protein -
  DV114_RS08970 - 1873925..1875070 (-) 1146 WP_107697373.1 hypothetical protein -
  DV114_RS08975 uvrB 1875420..1877447 (-) 2028 WP_101756426.1 excinuclease ABC subunit UvrB -
  DV114_RS08980 comP 1877663..1878157 (-) 495 WP_199903543.1 type IV pilin protein Machinery gene
  DV114_RS08985 comE 1878340..1878627 (-) 288 WP_004520163.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18032.10 Da        Isoelectric Point: 10.1982

>NTDB_id=304996 DV114_RS08980 WP_199903543.1 1877663..1878157(-) (comP) [Neisseria subflava strain M18660]
MYLKTFVGKRNGATVQRGYSLIQLLVVILLVSILATAAFTAYRESVRSANLRAAHAALLENARFMEQFYTKKGSFKLTST
KWPELPVKEAGGFCIRMSGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKSKGSCTDGEEIFRGNDAECK
PFMG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=304996 DV114_RS08980 WP_199903543.1 1877663..1878157(-) (comP) [Neisseria subflava strain M18660]
ATGTACTTAAAAACATTTGTTGGCAAACGGAATGGAGCAACTGTGCAGAGGGGGTACTCTTTGATACAGCTGTTGGTGGT
GATACTGCTGGTTTCGATCTTGGCAACGGCGGCCTTTACGGCCTATCGGGAGTCAGTCCGCTCGGCCAACTTGCGTGCGG
CTCATGCCGCCCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTACACAAAAAAGGGCAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAATTGCCGGTGAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGTCAGGCTAAGGGCATCCTGGAGGG
TAAGTTTACCTTGAAGGCGGTGGCGTTGGACAGGGAGGCGGAACCGAGGGTATTGCGTTTGAACGAGTCGTTGACAGCAG
TAGTGTGCGGGAAGATGAAGAGTAAGGGAAGCTGTACGGACGGCGAGGAGATATTTAGGGGCAATGATGCGGAGTGTAAG
CCTTTTATGGGGTGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(41-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

92.683

100

0.927
  comP Neisseria meningitidis 8013

51.007

90.854

0.463
  comP Neisseria gonorrhoeae MS11

51.02

89.634

0.457

Multiple sequence alignment