Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   DV114_RS03430 Genome accession   NZ_CP031251
Coordinates   687824..688423 (-) Length   199 a.a.
NCBI ID   WP_114926154.1    Uniprot ID   -
Organism   Neisseria subflava strain M18660     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 682824..693423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS03405 - 683878..684447 (-) 570 WP_107697079.1 RNA 2'-phosphotransferase -
  DV114_RS03410 trpE 684491..685966 (-) 1476 WP_107697078.1 anthranilate synthase component I -
  DV114_RS03415 - 686102..686479 (-) 378 WP_114926151.1 hypothetical protein -
  DV114_RS03420 - 686615..687235 (+) 621 WP_114926152.1 Smr/MutS family protein -
  DV114_RS03425 - 687288..687806 (-) 519 WP_114926153.1 PilX family type IV pilin -
  DV114_RS03430 pilK 687824..688423 (-) 600 WP_114926154.1 pilus assembly protein Machinery gene
  DV114_RS03435 pilJ 688402..689349 (-) 948 WP_114926155.1 pilus assembly protein PilW Machinery gene
  DV114_RS03440 pilV 689346..690014 (-) 669 WP_205317571.1 type IV pilus modification protein PilV -
  DV114_RS03445 pilH 690030..690710 (-) 681 WP_114926157.1 GspH/FimT family pseudopilin Machinery gene
  DV114_RS03450 dnaB 690869..692275 (-) 1407 WP_036490624.1 replicative DNA helicase -
  DV114_RS03455 - 692430..693011 (+) 582 WP_003683473.1 Fe-Mn family superoxide dismutase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22201.03 Da        Isoelectric Point: 6.6896

>NTDB_id=304979 DV114_RS03430 WP_114926154.1 687824..688423(-) (pilK) [Neisseria subflava strain M18660]
MRRPITLNKPNQQQGYALFIVLMMMVVIALLVVTATQSYNTEQRISTNDADHKFATTLAEAALREGENYIYSIEDGTTTF
DDDCTNGLCKAKSLPASKPNEPYTTTTGKVIVEGNSTEEAWHRECGKDKVKCIDINGIHYPGKNSGAKENCRPKKDACYI
IEYLSTNSTDNRTIYRVTAKAWGKNENTVVILQSYVANE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=304979 DV114_RS03430 WP_114926154.1 687824..688423(-) (pilK) [Neisseria subflava strain M18660]
ATGCGCCGACCGATCACTCTAAACAAACCTAACCAGCAGCAGGGCTATGCTTTGTTTATCGTCTTAATGATGATGGTCGT
CATCGCCCTGCTTGTAGTTACAGCCACCCAGTCCTACAACACCGAGCAGCGTATCAGTACAAATGACGCCGACCATAAAT
TTGCTACCACGCTTGCGGAAGCGGCATTGCGTGAAGGTGAGAACTATATTTATTCTATTGAAGATGGAACAACAACCTTT
GATGATGATTGTACAAATGGCCTTTGTAAAGCGAAATCACTCCCCGCGTCGAAGCCCAATGAACCATATACCACCACCAC
AGGAAAAGTAATAGTAGAAGGGAATTCCACTGAAGAGGCTTGGCATAGAGAATGTGGCAAAGATAAAGTTAAGTGCATTG
ATATTAACGGCATCCACTATCCTGGCAAAAATAGCGGAGCTAAAGAAAATTGCAGACCTAAAAAAGATGCGTGTTACATC
ATCGAATACCTAAGCACCAATTCTACCGACAACCGTACCATTTACCGCGTTACCGCCAAAGCATGGGGGAAAAACGAAAA
TACGGTGGTTATACTACAATCTTATGTAGCCAACGAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(107-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

48.804

100

0.513

Multiple sequence alignment