Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   DV114_RS03435 Genome accession   NZ_CP031251
Coordinates   688402..689349 (-) Length   315 a.a.
NCBI ID   WP_114926155.1    Uniprot ID   -
Organism   Neisseria subflava strain M18660     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 683402..694349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS03405 - 683878..684447 (-) 570 WP_107697079.1 RNA 2'-phosphotransferase -
  DV114_RS03410 trpE 684491..685966 (-) 1476 WP_107697078.1 anthranilate synthase component I -
  DV114_RS03415 - 686102..686479 (-) 378 WP_114926151.1 hypothetical protein -
  DV114_RS03420 - 686615..687235 (+) 621 WP_114926152.1 Smr/MutS family protein -
  DV114_RS03425 - 687288..687806 (-) 519 WP_114926153.1 PilX family type IV pilin -
  DV114_RS03430 pilK 687824..688423 (-) 600 WP_114926154.1 pilus assembly protein Machinery gene
  DV114_RS03435 pilJ 688402..689349 (-) 948 WP_114926155.1 pilus assembly protein PilW Machinery gene
  DV114_RS03440 pilV 689346..690014 (-) 669 WP_205317571.1 type IV pilus modification protein PilV -
  DV114_RS03445 pilH 690030..690710 (-) 681 WP_114926157.1 GspH/FimT family pseudopilin Machinery gene
  DV114_RS03450 dnaB 690869..692275 (-) 1407 WP_036490624.1 replicative DNA helicase -
  DV114_RS03455 - 692430..693011 (+) 582 WP_003683473.1 Fe-Mn family superoxide dismutase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34137.67 Da        Isoelectric Point: 7.2634

>NTDB_id=304980 DV114_RS03435 WP_114926155.1 688402..689349(-) (pilJ) [Neisseria subflava strain M18660]
MNNKRLLNHIPNKTAIRGFSILEFLVASLLSMIVLMAVSSTYFTARGLNKSANARIGIQQDLRNAANMIVRDARMAGNFG
CFNMSNFPASAVTGDKSSDEYTLKTAGVNNLLPIKEINKLSYPGFVQADNDKALLFQYGIDIDEKNSTAKTAIASSCSRI
AKPHTEIKNLEAAKSALKITNSDQDGSIAIMKHEMIAYAVGTLGKESGLFRFQLSNDGSWSSPQLLIKGITAMDIHYIYA
ECPDSENASSSGVNTESFDYKNALDISTEAKSPASIQIVLNNGSIDPSKEQDNKVDIYNINATIRGGNVCADRSL

Nucleotide


Download         Length: 948 bp        

>NTDB_id=304980 DV114_RS03435 WP_114926155.1 688402..689349(-) (pilJ) [Neisseria subflava strain M18660]
ATGAACAATAAACGCTTACTCAACCATATTCCCAATAAAACCGCCATTCGCGGTTTCAGCATCCTTGAATTTTTGGTTGC
CAGCCTGCTCAGTATGATTGTCTTAATGGCTGTCAGCTCCACCTACTTTACTGCACGCGGATTAAACAAATCTGCCAACG
CCCGCATCGGTATCCAACAAGATTTGCGCAACGCCGCCAATATGATTGTCCGCGATGCGCGTATGGCAGGCAATTTCGGC
TGCTTCAATATGTCGAATTTTCCTGCCTCTGCAGTAACAGGAGACAAAAGCTCAGATGAATATACCTTAAAAACAGCTGG
TGTGAATAATCTGTTACCGATTAAAGAAATCAATAAATTAAGCTATCCCGGCTTTGTTCAAGCTGACAATGACAAAGCCC
TGCTGTTCCAATACGGTATCGACATCGACGAGAAAAATTCTACTGCAAAAACCGCCATTGCCAGCAGTTGCTCCCGCATT
GCAAAGCCTCACACAGAAATTAAAAATTTGGAGGCGGCAAAATCGGCTTTAAAAATTACCAACTCTGATCAAGACGGCAG
TATCGCCATCATGAAGCATGAAATGATTGCTTACGCCGTCGGTACGCTTGGAAAAGAGAGCGGTTTGTTCCGTTTCCAAT
TATCAAATGATGGCTCCTGGAGTAGTCCGCAACTGTTGATTAAAGGCATCACTGCCATGGATATCCACTATATCTATGCA
GAATGTCCTGATTCTGAAAATGCATCTTCCAGCGGAGTAAATACAGAATCATTTGATTACAAAAACGCATTGGATATCTC
AACTGAAGCTAAGTCTCCAGCTTCTATCCAAATCGTACTGAATAACGGCAGTATTGACCCATCAAAAGAACAAGACAATA
AAGTCGATATCTATAATATTAATGCCACCATCCGCGGAGGAAACGTATGCGCCGACCGATCACTCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

47.059

100

0.483

Multiple sequence alignment