Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   DV114_RS03445 Genome accession   NZ_CP031251
Coordinates   690030..690710 (-) Length   226 a.a.
NCBI ID   WP_114926157.1    Uniprot ID   -
Organism   Neisseria subflava strain M18660     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 685030..695710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS03415 - 686102..686479 (-) 378 WP_114926151.1 hypothetical protein -
  DV114_RS03420 - 686615..687235 (+) 621 WP_114926152.1 Smr/MutS family protein -
  DV114_RS03425 - 687288..687806 (-) 519 WP_114926153.1 PilX family type IV pilin -
  DV114_RS03430 pilK 687824..688423 (-) 600 WP_114926154.1 pilus assembly protein Machinery gene
  DV114_RS03435 pilJ 688402..689349 (-) 948 WP_114926155.1 pilus assembly protein PilW Machinery gene
  DV114_RS03440 pilV 689346..690014 (-) 669 WP_205317571.1 type IV pilus modification protein PilV -
  DV114_RS03445 pilH 690030..690710 (-) 681 WP_114926157.1 GspH/FimT family pseudopilin Machinery gene
  DV114_RS03450 dnaB 690869..692275 (-) 1407 WP_036490624.1 replicative DNA helicase -
  DV114_RS03455 - 692430..693011 (+) 582 WP_003683473.1 Fe-Mn family superoxide dismutase -
  DV114_RS03460 - 693237..694778 (+) 1542 WP_101755524.1 OFA family MFS transporter -
  DV114_RS03465 - 694839..695684 (-) 846 WP_101755523.1 DUF817 domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25165.24 Da        Isoelectric Point: 5.3375

>NTDB_id=304981 DV114_RS03445 WP_114926157.1 690030..690710(-) (pilH) [Neisseria subflava strain M18660]
MYQTQKGFTLIELLIVITIAAVMAVIALPNMNQWIASRRAASQAEQIANLLRFARNEAVRLNLPVYICPAKIKSDGSHNG
CIHKKNSTSTSTSIGMLAYADKNENSSYQNDEDDLSIRYIILNGDTEKVEYRFDYIPSGTSLSALSSSDPKEVWWKFLPN
GTFEHSTDGKNYQFSDGHIKISLTDESATDAETKKARATVLLINGNGHVEICAKNDDREICEYTSE

Nucleotide


Download         Length: 681 bp        

>NTDB_id=304981 DV114_RS03445 WP_114926157.1 690030..690710(-) (pilH) [Neisseria subflava strain M18660]
ATGTATCAGACACAAAAAGGCTTCACCCTAATTGAGTTGCTGATCGTCATTACTATTGCAGCAGTAATGGCCGTCATTGC
ACTTCCCAATATGAATCAATGGATTGCCTCCAGACGTGCGGCATCGCAAGCAGAGCAAATTGCCAATCTGCTGCGCTTCG
CGCGTAATGAGGCCGTCCGTCTCAATCTTCCCGTTTACATCTGCCCGGCCAAAATCAAATCCGATGGCTCGCATAATGGT
TGCATTCACAAAAAAAACAGTACCAGTACCAGTACCAGTATTGGTATGTTGGCCTACGCCGATAAAAACGAAAATTCCAG
CTATCAAAATGATGAAGACGATTTATCTATCCGCTACATCATTCTCAATGGCGACACTGAAAAAGTGGAATACCGCTTCG
ACTATATTCCCAGCGGTACTTCACTTTCCGCCCTCTCCTCTTCCGATCCAAAAGAAGTCTGGTGGAAATTCCTGCCCAAT
GGTACATTTGAACATTCAACCGATGGCAAGAATTATCAATTTTCAGACGGCCACATCAAAATCAGCCTAACGGATGAATC
CGCCACCGATGCTGAAACCAAGAAAGCCCGTGCTACCGTACTTTTAATTAATGGCAATGGGCATGTCGAAATCTGTGCTA
AAAACGATGATCGCGAAATATGCGAATATACTTCCGAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(43-204)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

49.565

100

0.504

Multiple sequence alignment