Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ERW13_RS04080 Genome accession   NZ_CP035791
Coordinates   783589..784362 (-) Length   257 a.a.
NCBI ID   WP_130163212.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 592     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 778589..789362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERW13_RS04045 - 778837..779607 (-) 771 WP_000473699.1 isoprenyl transferase -
  ERW13_RS04050 frr 779980..780534 (-) 555 WP_001280006.1 ribosome recycling factor -
  ERW13_RS04055 pyrH 780553..781275 (-) 723 WP_000057330.1 UMP kinase -
  ERW13_RS04060 tsf 781412..782293 (-) 882 WP_000201392.1 translation elongation factor Ts -
  ERW13_RS04065 - 782328..782441 (-) 114 WP_001789890.1 hypothetical protein -
  ERW13_RS04070 rpsB 782475..783242 (-) 768 WP_000268486.1 30S ribosomal protein S2 -
  ERW13_RS04075 - 783441..783515 (-) 75 WP_031761472.1 hypothetical protein -
  ERW13_RS04080 codY 783589..784362 (-) 774 WP_130163212.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ERW13_RS04085 hslU 784387..785790 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  ERW13_RS04090 hslV 785856..786401 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ERW13_RS04095 xerC 786398..787294 (-) 897 WP_001015601.1 tyrosine recombinase XerC -
  ERW13_RS04100 trmFO 787712..789019 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28721.11 Da        Isoelectric Point: 6.0680

>NTDB_id=304981 ERW13_RS04080 WP_130163212.1 783589..784362(-) (codY) [Staphylococcus aureus strain 592]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDLNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=304981 ERW13_RS04080 WP_130163212.1 783589..784362(-) (codY) [Staphylococcus aureus strain 592]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTAAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.412

100

0.424

Multiple sequence alignment