Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DV114_RS02965 Genome accession   NZ_CP031251
Coordinates   598349..598876 (+) Length   175 a.a.
NCBI ID   WP_101755602.1    Uniprot ID   -
Organism   Neisseria subflava strain M18660     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 593349..603876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS02945 rbfA 594087..594458 (-) 372 WP_003685554.1 30S ribosome-binding factor RbfA -
  DV114_RS02950 ppx 594546..596054 (-) 1509 WP_101755604.1 exopolyphosphatase -
  DV114_RS02955 - 596227..596850 (+) 624 WP_101755603.1 lytic transglycosylase domain-containing protein -
  DV114_RS02960 - 596965..598347 (+) 1383 WP_070823553.1 MFS transporter -
  DV114_RS02965 ssb 598349..598876 (+) 528 WP_101755602.1 single-stranded DNA-binding protein Machinery gene
  DV114_RS02970 plsY 598950..599561 (-) 612 WP_101755601.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  DV114_RS02975 folB 599619..599969 (+) 351 WP_101755600.1 dihydroneopterin aldolase -
  DV114_RS02980 - 600016..600663 (+) 648 WP_101755599.1 nuclease-related domain-containing protein -
  DV114_RS02985 - 600748..601284 (+) 537 WP_070646807.1 NUDIX hydrolase -
  DV114_RS02990 - 601464..601856 (+) 393 WP_101755598.1 hypothetical protein -
  DV114_RS02995 - 601939..602577 (-) 639 WP_101755597.1 alpha/beta hydrolase -
  DV114_RS03000 - 602617..603411 (-) 795 WP_107697121.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19521.58 Da        Isoelectric Point: 5.7974

>NTDB_id=304976 DV114_RS02965 WP_101755602.1 598349..598876(+) (ssb) [Neisseria subflava strain M18660]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLRKGSQVYLEGRI
QSRKYQGKDGIERTAYDIIANEMKMLGGRNDNSGGAPYDDGYNQGGHSSQGSYQQAPQQQYQSAPAQELPAAPARRPAPA
QPTAPVDDIDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=304976 DV114_RS02965 WP_101755602.1 598349..598876(+) (ssb) [Neisseria subflava strain M18660]
ATGTCATTAAATAAAGTCATCCTTATCGGCCGTCTCGGCCGCGACCCGGAAGTCCGCTATATGCCCAACGGCGAGGCCGT
CTGTAACTTCAGCGTTGCCACCAGCGAAACGTGGAATGACCGTAACGGCCAACGCGTAGAACGTACCGAATGGCACAACA
TCACCATGTACCGCAAACTCGCCGAAATCGCCGGTCAATACCTGCGTAAAGGCAGCCAAGTGTATCTGGAAGGCCGTATC
CAAAGCCGTAAATACCAAGGCAAAGACGGCATCGAGCGCACCGCTTACGACATCATCGCCAACGAAATGAAAATGCTTGG
CGGCCGCAACGACAACAGCGGCGGCGCACCATATGATGACGGCTACAACCAAGGCGGCCATTCAAGCCAAGGCAGTTACC
AACAAGCGCCACAGCAGCAATACCAATCTGCTCCGGCTCAAGAACTCCCAGCAGCCCCAGCCCGTCGTCCCGCTCCGGCA
CAACCGACCGCTCCGGTTGATGATATCGACGATGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

81.667

100

0.84
  ssb Neisseria meningitidis MC58

81.111

100

0.834
  ssb Vibrio cholerae strain A1552

50.562

100

0.514
  ssb Glaesserella parasuis strain SC1401

45.699

100

0.486

Multiple sequence alignment