Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | DV389_RS04155 | Genome accession | NZ_CP031250 |
| Coordinates | 842440..842946 (-) | Length | 168 a.a. |
| NCBI ID | WP_114893185.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain M21384 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 837440..847946
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DV389_RS04125 (DV389_04125) | nudC | 837932..838726 (-) | 795 | WP_114893179.1 | NAD(+) diphosphatase | - |
| DV389_RS04130 (DV389_04130) | nfuA | 838794..839390 (-) | 597 | WP_114893180.1 | Fe-S biogenesis protein NfuA | - |
| DV389_RS04135 (DV389_04135) | - | 839466..840152 (-) | 687 | WP_162816767.1 | ComF family protein | - |
| DV389_RS04140 (DV389_04140) | comE | 840165..841502 (-) | 1338 | WP_114893182.1 | type IV pilus secretin PilQ | Machinery gene |
| DV389_RS04145 (DV389_04145) | comD | 841512..841925 (-) | 414 | WP_114893183.1 | pilus assembly protein PilP | Machinery gene |
| DV389_RS04150 (DV389_04150) | comC | 841943..842443 (-) | 501 | WP_114893184.1 | competence protein ComC | Machinery gene |
| DV389_RS04155 (DV389_04155) | comB | 842440..842946 (-) | 507 | WP_114893185.1 | competence protein B | Machinery gene |
| DV389_RS04160 (DV389_04160) | comA | 842947..843744 (-) | 798 | WP_114893186.1 | pilus assembly protein PilM | Machinery gene |
| DV389_RS04165 (DV389_04165) | - | 843843..846443 (+) | 2601 | WP_114893187.1 | penicillin-binding protein 1A | - |
| DV389_RS04170 (DV389_04170) | - | 846520..847365 (+) | 846 | WP_114893188.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| DV389_RS04175 (DV389_04175) | - | 847524..847853 (+) | 330 | WP_105904681.1 | YbaB/EbfC family nucleoid-associated protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19905.90 Da Isoelectric Point: 9.6569
>NTDB_id=304952 DV389_RS04155 WP_114893185.1 842440..842946(-) (comB) [Haemophilus influenzae strain M21384]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLTLAFSNLIEQQKQDLQAQQTSFEQLNQQLYKTAKKIEQLRSAVQVG
EILTSIPKEQVKKSLQLLSELPFQQGELNKFKQDAHNLSLEGLAQDQREFELIHQFLKKHFPNVKLSQFQPEQQSLYFRF
DVEQGEEK
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLTLAFSNLIEQQKQDLQAQQTSFEQLNQQLYKTAKKIEQLRSAVQVG
EILTSIPKEQVKKSLQLLSELPFQQGELNKFKQDAHNLSLEGLAQDQREFELIHQFLKKHFPNVKLSQFQPEQQSLYFRF
DVEQGEEK
Nucleotide
Download Length: 507 bp
>NTDB_id=304952 DV389_RS04155 WP_114893185.1 842440..842946(-) (comB) [Haemophilus influenzae strain M21384]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAACCTTGGCTTTTAGTAATCTAATTGAACAACAAAAACAAGATCTGCAAGCGCAACAAA
CATCTTTTGAACAACTTAATCAGCAACTTTATAAAACCGCCAAGAAAATTGAACAGTTACGTAGTGCAGTGCAGGTTGGC
GAAATTTTGACATCTATTCCTAAAGAGCAAGTAAAAAAGAGTTTACAGCTGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCTCATAACTTAAGTTTGGAAGGTCTCGCACAAGATCAAAGAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGCCAGTTTCAGCCTGAACAACAGTCATTGTATTTTCGCTTT
GATGTGGAACAAGGAGAAGAAAAGTGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAACCTTGGCTTTTAGTAATCTAATTGAACAACAAAAACAAGATCTGCAAGCGCAACAAA
CATCTTTTGAACAACTTAATCAGCAACTTTATAAAACCGCCAAGAAAATTGAACAGTTACGTAGTGCAGTGCAGGTTGGC
GAAATTTTGACATCTATTCCTAAAGAGCAAGTAAAAAAGAGTTTACAGCTGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCTCATAACTTAAGTTTGGAAGGTCTCGCACAAGATCAAAGAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGCCAGTTTCAGCCTGAACAACAGTCATTGTATTTTCGCTTT
GATGTGGAACAAGGAGAAGAAAAGTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
88.095 |
100 |
0.881 |
| comB | Haemophilus influenzae Rd KW20 |
86.905 |
100 |
0.869 |