Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | DV389_RS04145 | Genome accession | NZ_CP031250 |
| Coordinates | 841512..841925 (-) | Length | 137 a.a. |
| NCBI ID | WP_114893183.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain M21384 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 836512..846925
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DV389_RS04115 (DV389_04115) | - | 836895..837167 (-) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
| DV389_RS04120 (DV389_04120) | - | 837306..837896 (-) | 591 | WP_114893178.1 | DUF416 family protein | - |
| DV389_RS04125 (DV389_04125) | nudC | 837932..838726 (-) | 795 | WP_114893179.1 | NAD(+) diphosphatase | - |
| DV389_RS04130 (DV389_04130) | nfuA | 838794..839390 (-) | 597 | WP_114893180.1 | Fe-S biogenesis protein NfuA | - |
| DV389_RS04135 (DV389_04135) | - | 839466..840152 (-) | 687 | WP_162816767.1 | ComF family protein | - |
| DV389_RS04140 (DV389_04140) | comE | 840165..841502 (-) | 1338 | WP_114893182.1 | type IV pilus secretin PilQ | Machinery gene |
| DV389_RS04145 (DV389_04145) | comD | 841512..841925 (-) | 414 | WP_114893183.1 | pilus assembly protein PilP | Machinery gene |
| DV389_RS04150 (DV389_04150) | comC | 841943..842443 (-) | 501 | WP_114893184.1 | competence protein ComC | Machinery gene |
| DV389_RS04155 (DV389_04155) | comB | 842440..842946 (-) | 507 | WP_114893185.1 | competence protein B | Machinery gene |
| DV389_RS04160 (DV389_04160) | comA | 842947..843744 (-) | 798 | WP_114893186.1 | pilus assembly protein PilM | Machinery gene |
| DV389_RS04165 (DV389_04165) | - | 843843..846443 (+) | 2601 | WP_114893187.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15657.78 Da Isoelectric Point: 4.4355
>NTDB_id=304950 DV389_RS04145 WP_114893183.1 841512..841925(-) (comD) [Haemophilus influenzae strain M21384]
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLLDQNLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLLDQNLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=304950 DV389_RS04145 WP_114893183.1 841512..841925(-) (comD) [Haemophilus influenzae strain M21384]
ATGAAGTATTGGTTTTTCCTAACTGCATTGCTTTTTATAAATTGCAGTTGGGGGCAGGATCCTTTCGATAAAACACAACG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCCTTGAATGCTTTAAAATTGGTGGGTGTAGTGATTTCTAAAGAT
AAAGCGTTTGCGTTATTGCTGGATCAGAATTTGCAAATTTACAGTGTTTTAGAGGGTGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTAACTGCATTGCTTTTTATAAATTGCAGTTGGGGGCAGGATCCTTTCGATAAAACACAACG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCCTTGAATGCTTTAAAATTGGTGGGTGTAGTGATTTCTAAAGAT
AAAGCGTTTGCGTTATTGCTGGATCAGAATTTGCAAATTTACAGTGTTTTAGAGGGTGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
94.891 |
100 |
0.949 |
| comD | Haemophilus influenzae Rd KW20 |
94.161 |
100 |
0.942 |