Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   DV130_RS03065 Genome accession   NZ_CP031248
Coordinates   585743..586696 (-) Length   317 a.a.
NCBI ID   WP_000495900.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M26365     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 580743..591696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV130_RS03035 - 581234..581329 (-) 96 Protein_593 IS630 family transposase -
  DV130_RS03045 - 581741..582082 (+) 342 Protein_594 IS3 family transposase -
  DV130_RS03050 prsA 582199..583140 (-) 942 WP_000727935.1 peptidylprolyl isomerase PrsA -
  DV130_RS03055 - 583207..583920 (-) 714 WP_000230399.1 O-methyltransferase -
  DV130_RS03060 pepF 583922..585724 (-) 1803 WP_000244142.1 oligoendopeptidase F Regulator
  DV130_RS03065 coiA 585743..586696 (-) 954 WP_000495900.1 competence protein CoiA Machinery gene
  DV130_RS03070 tehB 586769..587629 (-) 861 WP_000413762.1 SAM-dependent methyltransferase TehB -
  DV130_RS03075 smpB 587645..588112 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -
  DV130_RS03080 rnr 588075..590429 (-) 2355 WP_000654917.1 ribonuclease R -
  DV130_RS03085 secG 590531..590764 (-) 234 WP_000282517.1 preprotein translocase subunit SecG -
  DV130_RS03090 rpmG 590804..590953 (-) 150 WP_001809104.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38243.86 Da        Isoelectric Point: 8.9865

>NTDB_id=304829 DV130_RS03065 WP_000495900.1 585743..586696(-) (coiA) [Streptococcus pneumoniae strain M26365]
MFVARDARGELVNVLEDKLEKQAYTCPACGGQIHLRQGPSVRTHFAHKSLKDCDFFFENESPEHLANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLALEVQCSPLPQKVLKERSEGYRSQGYQVLWLLGQKLWLKERLTRLQQGFLYFSQNMGF
YVWELDKEKQVLRLKYLIYQDLRGKLHYQIKEFSYGQGSLLEILRLPYKRQKISHFTVSEDKDICRYIRQQLYYQNLFWM
KEQAEAYQKGENILTYGLKEWYPQIRPIVGKFFQIEQDLTSYYQHFYTYYQKNPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=304829 DV130_RS03065 WP_000495900.1 585743..586696(-) (coiA) [Streptococcus pneumoniae strain M26365]
ATGTTTGTTGCGAGAGATGCTAGGGGAGAATTGGTAAATGTGTTAGAGGATAAACTTGAGAAGCAAGCATACACCTGCCC
AGCTTGTGGAGGCCAGATCCATTTGCGTCAAGGACCAAGTGTACGGACGCATTTTGCCCATAAATCCTTAAAAGACTGTG
ATTTTTTCTTTGAAAATGAAAGTCCAGAACACCTGGCCAATAAGGAATCCCTCTATCACTGGTTGAAAAAAGAGACAAAG
GTTCAATTAGAGTACCCGCTTTCAGAACTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTAGAAGTTCA
GTGTAGTCCCTTGCCTCAGAAAGTCCTTAAAGAGCGAAGTGAGGGCTATCGTAGTCAGGGTTACCAAGTACTGTGGTTGC
TGGGTCAAAAACTGTGGCTCAAGGAGCGTTTGACTCGTCTACAGCAAGGTTTTCTTTATTTCAGTCAAAACATGGGCTTT
TATGTTTGGGAATTAGACAAGGAAAAACAAGTTTTAAGACTCAAATACCTGATTTACCAGGATCTCCGCGGTAAACTCCA
TTATCAAATCAAGGAATTTTCCTATGGTCAAGGTAGTTTATTGGAAATATTGCGTCTTCCCTATAAGAGACAAAAAATAT
CTCATTTTACAGTTTCTGAGGACAAGGACATCTGTCGCTATATCCGGCAACAACTTTATTATCAAAATCTCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATATCCTGACTTATGGACTGAAAGAATGGTATCCACAAATTCGACC
AATAGTGGGCAAATTTTTCCAGATTGAACAAGACTTGACTAGCTATTATCAGCACTTTTATACCTATTACCAAAAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

99.685

100

0.997
  coiA Streptococcus pneumoniae Rx1

99.054

100

0.991
  coiA Streptococcus pneumoniae D39

99.054

100

0.991
  coiA Streptococcus pneumoniae R6

99.054

100

0.991
  coiA Streptococcus mitis NCTC 12261

88.959

100

0.89
  coiA Lactococcus lactis subsp. cremoris KW2

42.284

100

0.432

Multiple sequence alignment