Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DV131_RS02865 Genome accession   NZ_CP031246
Coordinates   516634..517296 (-) Length   220 a.a.
NCBI ID   WP_000649968.1    Uniprot ID   A0A098Z9B1
Organism   Streptococcus pneumoniae strain M26368     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 511634..522296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV131_RS02840 - 511784..512050 (-) 267 WP_001278167.1 Veg family protein -
  DV131_RS02845 dnaB 512052..513404 (-) 1353 WP_114865843.1 replicative DNA helicase -
  DV131_RS02850 rplI 513448..513900 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  DV131_RS02855 - 513897..515870 (-) 1974 WP_000715124.1 DHH family phosphoesterase -
  DV131_RS02860 raiA 516006..516554 (-) 549 WP_000599107.1 ribosome-associated translation inhibitor RaiA -
  DV131_RS02865 comFC/cflB 516634..517296 (-) 663 WP_000649968.1 ComF family protein Machinery gene
  DV131_RS02870 comFA/cflA 517293..518591 (-) 1299 WP_000867601.1 DEAD/DEAH box helicase Machinery gene
  DV131_RS02875 - 518647..519282 (+) 636 WP_114865844.1 YigZ family protein -
  DV131_RS02880 cysK 519567..520487 (+) 921 WP_050200397.1 cysteine synthase A -
  DV131_RS02890 - 520562..521091 (-) 530 Protein_505 transposase -
  DV131_RS02895 - 521073..521381 (+) 309 Protein_506 transposase -
  DV131_RS02900 tnpB 521522..521845 (-) 324 WP_000973416.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25203.05 Da        Isoelectric Point: 7.7116

>NTDB_id=304696 DV131_RS02865 WP_000649968.1 516634..517296(-) (comFC/cflB) [Streptococcus pneumoniae strain M26368]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQFWCKEGVGVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=304696 DV131_RS02865 WP_000649968.1 516634..517296(-) (comFC/cflB) [Streptococcus pneumoniae strain M26368]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAATTTTGGTGTAAAGAAGGAGTTGGAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098Z9B1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae D39

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae R6

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae TIGR4

99.091

100

0.991
  comFC/cflB Streptococcus mitis SK321

91.364

100

0.914
  comFC/cflB Streptococcus mitis NCTC 12261

90.909

100

0.909

Multiple sequence alignment