Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ECE110019_RS25100 Genome accession   NZ_CP035751
Coordinates   5103481..5104017 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli E110019     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5098481..5109017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECE110019_RS25080 aphA 5098770..5099483 (+) 714 WP_001317548.1 acid phosphatase AphA -
  ECE110019_RS25085 yjbQ 5099594..5100010 (+) 417 WP_000270376.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ECE110019_RS25090 yjbR 5100014..5100370 (+) 357 WP_000155674.1 MmcQ/YjbR family DNA-binding protein -
  ECE110019_RS25095 uvrA 5100405..5103227 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  ECE110019_RS25100 ssb 5103481..5104017 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ECE110019_RS25105 yjcB 5104115..5104396 (-) 282 WP_001295689.1 YjcB family protein -
  ECE110019_RS25110 pdeC 5104826..5106412 (+) 1587 WP_000019531.1 c-di-GMP phosphodiesterase PdeC -
  ECE110019_RS25115 soxS 5106415..5106738 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ECE110019_RS25120 soxR 5106824..5107288 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=304630 ECE110019_RS25100 WP_000168305.1 5103481..5104017(+) (ssb) [Escherichia coli E110019]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=304630 ECE110019_RS25100 WP_000168305.1 5103481..5104017(+) (ssb) [Escherichia coli E110019]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489