Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   DV119_RS00900 Genome accession   NZ_CP031245
Coordinates   157491..158558 (-) Length   355 a.a.
NCBI ID   WP_000159553.1    Uniprot ID   A0A0T8CF10
Organism   Streptococcus pneumoniae strain M16808     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 152491..163558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV119_RS00880 treR 154288..154998 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  DV119_RS00890 - 155153..156479 (+) 1327 Protein_166 ISL3 family transposase -
  DV119_RS00895 amiF 156554..157480 (-) 927 WP_044812815.1 ATP-binding cassette domain-containing protein Regulator
  DV119_RS00900 amiE 157491..158558 (-) 1068 WP_000159553.1 ABC transporter ATP-binding protein Regulator
  DV119_RS00905 amiD 158567..159493 (-) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator
  DV119_RS00910 amiC 159493..160989 (-) 1497 WP_000759902.1 ABC transporter permease Regulator
  DV119_RS00915 amiA3 161056..163053 (-) 1998 WP_114880767.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39437.04 Da        Isoelectric Point: 4.8002

>NTDB_id=304593 DV119_RS00900 WP_000159553.1 157491..158558(-) (amiE) [Streptococcus pneumoniae strain M16808]
MTKEKNVILTARDIVVEFDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEENGRIAQGSIDYRGQDL
TALSSHKDWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQGKTAKEAKELAIDYMNKVGIPDADRRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPCHPYTWSLLSSLPQLADDKGDLYSIPGTPPSLYTDLKGDAFALRSDYAMQIDFEQKAPQFSVSETHWAK
TWLLHEDAPKVEKPAVIANLHDKIREKMGFAHLAD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=304593 DV119_RS00900 WP_000159553.1 157491..158558(-) (amiE) [Streptococcus pneumoniae strain M16808]
ATGACAAAAGAAAAAAATGTAATTTTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTATTGACAGC
CATTCGCGGCGTTTCCCTTGAACTAGTCGAAGGAGAAGTATTAGCCTTGGTAGGTGAGTCAGGATCAGGTAAATCTGTTT
TGACAAAGACCTTCACAGGTATGCTCGAAGAAAATGGTCGCATTGCCCAAGGTAGTATTGACTACCGTGGTCAGGACTTG
ACAGCTTTATCTTCTCACAAGGATTGGGAACAAATTCGTGGTGCTAAGATTGCGACTATCTTCCAGGACCCAATGACTAG
TTTGGACCCCATTAAAACAATTGGTAGTCAGATTACAGAAGTTATTGTAAAACACCAAGGAAAAACAGCTAAAGAAGCGA
AAGAATTGGCCATTGACTACATGAATAAGGTTGGCATTCCAGACGCAGATAGACGTTTTAATGAATACCCATTCCAATAT
TCTGGAGGAATGCGTCAACGTATCGTTATTGCTATTGCCCTTGCCTGCCGACCTGATGTCTTGATCTGTGATGAGCCAAC
AACTGCCTTGGATGTAACTATTCAAGCTCAGATTATTGATTTGCTAAAATCTTTACAAAACGAGTATCATTTCACAACAA
TCTTTATTACCCACGACCTTGGTGTGGTGGCAAGTATTGCGGATAAGGTAGCGGTTATGTATGCAGGAGAAATCGTTGAG
TATGGAACTGTTGAGGAAGTCTTCTATGACCCTTGCCATCCATATACATGGAGTCTCTTGTCTAGCTTGCCTCAGCTTGC
TGATGATAAAGGGGATCTTTACTCAATCCCAGGAACACCTCCGTCACTTTATACTGACCTGAAAGGGGATGCTTTTGCCT
TGCGTTCTGACTACGCAATGCAGATTGACTTCGAACAAAAAGCTCCTCAATTCTCAGTATCAGAGACACATTGGGCTAAA
ACTTGGCTTCTTCATGAGGATGCTCCAAAAGTAGAAAAACCAGCTGTGATTGCAAATCTCCATGATAAGATCCGTGAAAA
AATGGGATTTGCCCATCTGGCTGACTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T8CF10

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

88.451

100

0.885
  amiE Streptococcus thermophilus LMG 18311

86.761

100

0.868
  amiE Streptococcus thermophilus LMD-9

86.761

100

0.868
  oppD Streptococcus mutans UA159

54.545

99.155

0.541

Multiple sequence alignment