Detailed information NTG0304595

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECE110019_RS17970
• Genome accession: NZ_CP035751
• Coordinates: 3606405..3607397 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli E110019
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3601405..3612397

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECE110019_RS17945	ygbN	3602059..3603423 (+)	1365	WP_000104430.1	GntP family transporter	-
ECE110019_RS17950	-	3603463..3603699 (-)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
ECE110019_RS17955	-	3603710..3605137 (-)	1428	WP_000863221.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
ECE110019_RS17960	-	3605137..3605730 (-)	594	WP_000767716.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
ECE110019_RS17965	-	3605877..3606284 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
ECE110019_RS17970	rpoS	3606405..3607397 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ECE110019_RS17975	nlpD	3607460..3608554 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ECE110019_RS17980	pcm	3608739..3609365 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ECE110019_RS17985	surE	3609359..3610120 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ECE110019_RS17990	truD	3610101..3611150 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ECE110019_RS17995	ispF	3611147..3611626 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECE110019_RS18000	ispD	3611626..3612336 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=304595 ECE110019_RS17970 WP_000081550.1 3606405..3607397(-) (rpoS) [Escherichia coli E110019]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=304595 ECE110019_RS17970 WP_000081550.1 3606405..3607397(-) (rpoS) [Escherichia coli E110019]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715