Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ECE110019_RS17665 Genome accession   NZ_CP035751
Coordinates   3549664..3550179 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli E110019     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3544664..3555179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECE110019_RS17640 ygaZ 3545063..3545800 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  ECE110019_RS17645 ygaH 3545790..3546125 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  ECE110019_RS17650 emrR 3546216..3546746 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  ECE110019_RS17655 emrA 3546873..3548045 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  ECE110019_RS17660 emrB 3548062..3549600 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  ECE110019_RS17665 luxS 3549664..3550179 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  ECE110019_RS17670 gshA 3550329..3551885 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  ECE110019_RS17675 yqaA 3551958..3552386 (-) 429 WP_001287457.1 YqaA family protein -
  ECE110019_RS17680 yqaB 3552383..3552949 (-) 567 WP_000273301.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  ECE110019_RS17710 csrA 3554403..3554588 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=304592 ECE110019_RS17665 WP_001130211.1 3549664..3550179(-) (luxS) [Escherichia coli E110019]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=304592 ECE110019_RS17665 WP_001130211.1 3549664..3550179(-) (luxS) [Escherichia coli E110019]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment