Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ECE110019_RS17075 Genome accession   NZ_CP035751
Coordinates   3446485..3447222 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli E110019     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3441485..3452222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECE110019_RS17060 clpC 3441939..3444512 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  ECE110019_RS17065 yfiH 3444642..3445373 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  ECE110019_RS17070 rluD 3445370..3446350 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ECE110019_RS17075 comL 3446485..3447222 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ECE110019_RS17080 raiA 3447493..3447834 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ECE110019_RS17085 pheL 3447938..3447985 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ECE110019_RS17090 pheA 3448084..3449244 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  ECE110019_RS17095 tyrA 3449287..3450408 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ECE110019_RS17100 aroF 3450419..3451489 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ECE110019_RS17105 yfiL 3451699..3452064 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=304591 ECE110019_RS17075 WP_000197686.1 3446485..3447222(+) (comL) [Escherichia coli E110019]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=304591 ECE110019_RS17075 WP_000197686.1 3446485..3447222(+) (comL) [Escherichia coli E110019]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment