Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   DV428_RS02935 Genome accession   NZ_CP031243
Coordinates   561503..561850 (+) Length   115 a.a.
NCBI ID   WP_065250343.1    Uniprot ID   A0AAQ1YLA5
Organism   Haemophilus haemolyticus strain M19346     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 556503..566850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV428_RS02920 - 558247..559806 (+) 1560 WP_114908619.1 phosphoethanolamine transferase -
  DV428_RS02925 lspA 559876..560391 (+) 516 WP_114908620.1 signal peptidase II -
  DV428_RS02930 ispH 560388..561332 (+) 945 WP_005634483.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DV428_RS02935 comE1/comEA 561503..561850 (+) 348 WP_065250343.1 helix-hairpin-helix domain-containing protein Machinery gene
  DV428_RS02940 - 561879..562256 (-) 378 WP_114908621.1 DUF305 domain-containing protein -
  DV428_RS02945 - 562439..562609 (+) 171 WP_239993710.1 EAL domain-containing protein -
  DV428_RS02950 thiB 562788..563786 (+) 999 WP_114908623.1 thiamine ABC transporter substrate binding subunit -
  DV428_RS02955 thiP 563791..565407 (+) 1617 WP_114908624.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  DV428_RS02960 thiQ 565391..566038 (+) 648 WP_114908625.1 thiamine ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12322.14 Da        Isoelectric Point: 8.0102

>NTDB_id=304568 DV428_RS02935 WP_065250343.1 561503..561850(+) (comE1/comEA) [Haemophilus haemolyticus strain M19346]
MKLMKTLFTSVVLCGALVASSAFAEEKTAEQAVQPVVATQTEAQVAPATVSDKLNINTATVSEIQKALTGIGAKKAEAIV
QYREKHGNFTSAEQLLEVQGIGKATLERNRDRITF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=304568 DV428_RS02935 WP_065250343.1 561503..561850(+) (comE1/comEA) [Haemophilus haemolyticus strain M19346]
ATGAAATTAATGAAAACATTATTTACTTCAGTTGTATTGTGTGGCGCGCTGGTTGCCTCTTCGGCTTTTGCTGAGGAAAA
AACTGCAGAGCAGGCTGTTCAACCTGTTGTGGCTACTCAAACTGAGGCTCAAGTTGCACCGGCTACTGTGAGTGATAAAT
TGAATATCAATACGGCAACCGTTAGTGAAATTCAAAAAGCCTTAACAGGAATCGGTGCTAAAAAAGCAGAAGCGATAGTG
CAATATCGTGAAAAACACGGTAATTTTACGAGTGCTGAACAGTTATTAGAAGTGCAAGGAATTGGTAAAGCAACACTTGA
AAGAAACCGTGATCGAATCACTTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

84.821

97.391

0.826
  comEA/comE1 Glaesserella parasuis strain SC1401

57.018

99.13

0.565
  comEA Vibrio campbellii strain DS40M4

39.091

95.652

0.374

Multiple sequence alignment