Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | DV390_RS06550 | Genome accession | NZ_CP031242 |
| Coordinates | 1321976..1322389 (+) | Length | 137 a.a. |
| NCBI ID | WP_042594787.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain M21460 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1316976..1327389
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DV390_RS06530 | - | 1317464..1320058 (-) | 2595 | WP_042611819.1 | penicillin-binding protein 1A | - |
| DV390_RS06535 | comA | 1320157..1320954 (+) | 798 | WP_013527435.1 | pilus assembly protein PilM | Machinery gene |
| DV390_RS06540 | comB | 1320955..1321461 (+) | 507 | WP_038439363.1 | competence protein ComB | Machinery gene |
| DV390_RS06545 | comC | 1321458..1321979 (+) | 522 | WP_005662592.1 | competence protein ComC | Machinery gene |
| DV390_RS06550 | comD | 1321976..1322389 (+) | 414 | WP_042594787.1 | pilus assembly protein PilP | Machinery gene |
| DV390_RS06555 | comE | 1322399..1323736 (+) | 1338 | WP_042594789.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| DV390_RS06560 | - | 1323749..1324435 (+) | 687 | WP_042594791.1 | ComF family protein | - |
| DV390_RS06565 | nfuA | 1324511..1325107 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| DV390_RS06570 | nudC | 1325174..1325968 (+) | 795 | WP_042594793.1 | NAD(+) diphosphatase | - |
| DV390_RS06575 | - | 1326004..1326594 (+) | 591 | WP_042594795.1 | YjaG family protein | - |
| DV390_RS06580 | - | 1326734..1327006 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15643.76 Da Isoelectric Point: 4.5641
>NTDB_id=304540 DV390_RS06550 WP_042594787.1 1321976..1322389(+) (comD) [Haemophilus influenzae strain M21460]
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVRFMRKLGEQCDSSEWKKLSF
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVRFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=304540 DV390_RS06550 WP_042594787.1 1321976..1322389(+) (comD) [Haemophilus influenzae strain M21460]
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAAGGTTTGCAAATTTACAGTGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCGATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAAGGTTTGCAAATTTACAGTGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCGATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
95.62 |
100 |
0.956 |
| comD | Haemophilus influenzae Rd KW20 |
94.891 |
100 |
0.949 |