Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   DV390_RS03515 Genome accession   NZ_CP031242
Coordinates   712820..713167 (-) Length   115 a.a.
NCBI ID   WP_005686287.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M21460     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 707820..718167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV390_RS03495 bioB 708209..709210 (-) 1002 WP_005655985.1 biotin synthase BioB -
  DV390_RS03500 thiQ 709323..709970 (-) 648 WP_005647864.1 thiamine ABC transporter ATP-binding protein -
  DV390_RS03505 thiP 709954..711570 (-) 1617 WP_042594417.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  DV390_RS03510 thiB 711575..712573 (-) 999 WP_042594416.1 thiamine ABC transporter substrate binding subunit -
  DV390_RS03515 comE1/comEA 712820..713167 (-) 348 WP_005686287.1 helix-hairpin-helix domain-containing protein Machinery gene
  DV390_RS03520 ispH 713336..714280 (-) 945 WP_005651634.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DV390_RS03525 lspA 714277..714792 (-) 516 WP_042594415.1 signal peptidase II -
  DV390_RS03530 - 714862..716421 (-) 1560 WP_042594414.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12363.23 Da        Isoelectric Point: 8.0085

>NTDB_id=304521 DV390_RS03515 WP_005686287.1 712820..713167(-) (comE1/comEA) [Haemophilus influenzae strain M21460]
MKLMKTLFTSVVLCGVLVVSSSFAEEKATEQTAQPVVATQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=304521 DV390_RS03515 WP_005686287.1 712820..713167(-) (comE1/comEA) [Haemophilus influenzae strain M21460]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGTGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

95.536

97.391

0.93
  comEA/comE1 Glaesserella parasuis strain SC1401

58.772

99.13

0.583
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383
  comEA Acinetobacter baumannii strain A118

32.824

100

0.374

Multiple sequence alignment