Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   EPB55_RS15740 Genome accession   NZ_CP035731
Coordinates   3235247..3235834 (+) Length   195 a.a.
NCBI ID   WP_011080649.1    Uniprot ID   A0A3Q0L6H9
Organism   Vibrio vulnificus strain 2142-77     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3230247..3240834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB55_RS15725 - 3232005..3232517 (-) 513 WP_011150092.1 hypothetical protein -
  EPB55_RS15730 - 3232715..3233620 (-) 906 WP_013571963.1 lysine exporter LysO family protein -
  EPB55_RS15735 - 3233967..3234887 (-) 921 WP_011150094.1 HDOD domain-containing protein -
  EPB55_RS15740 tfoX 3235247..3235834 (+) 588 WP_011080649.1 TfoX/Sxy family DNA transformation protein Regulator
  EPB55_RS15745 - 3236161..3236709 (-) 549 WP_011080648.1 hypothetical protein -
  EPB55_RS15750 - 3236917..3237414 (-) 498 WP_011150095.1 response regulator -
  EPB55_RS15755 - 3237407..3239350 (-) 1944 WP_013571961.1 ATP-binding protein -
  EPB55_RS15760 - 3239540..3240802 (+) 1263 WP_011080645.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22355.62 Da        Isoelectric Point: 7.9321

>NTDB_id=304451 EPB55_RS15740 WP_011080649.1 3235247..3235834(+) (tfoX) [Vibrio vulnificus strain 2142-77]
MDMTEQAFFDYINQFGDFQKRSMFGGIGLFAEDAMFALVSNGCYYLRGGDSLDDTFCQLGCEKYRHVKKQTTATVNYYEV
SNLLDNRDGQLDRLVKQSIACSVKQRNFQKSSASRRLRDLPNMQLTLERMVKKAGIDDVETFMELGAIEVFNRVKQAYGN
DVDVKLLWKFAGAVEGIHWKLLQEPRRKQLLAACC

Nucleotide


Download         Length: 588 bp        

>NTDB_id=304451 EPB55_RS15740 WP_011080649.1 3235247..3235834(+) (tfoX) [Vibrio vulnificus strain 2142-77]
ATGGATATGACAGAACAAGCTTTTTTTGACTACATCAACCAATTTGGTGATTTTCAGAAACGTTCAATGTTCGGTGGTAT
CGGCCTGTTTGCGGAAGATGCCATGTTTGCATTGGTGAGTAATGGTTGCTACTACCTTCGTGGTGGAGACAGTTTGGATG
ATACTTTTTGCCAATTGGGCTGTGAGAAGTATCGTCATGTCAAAAAGCAAACCACTGCTACTGTAAATTACTACGAAGTA
TCTAATCTACTTGATAATCGAGATGGTCAGTTGGATCGTTTGGTAAAGCAGTCTATAGCGTGCTCTGTAAAGCAACGTAA
TTTCCAAAAATCATCTGCCAGTCGTCGTTTAAGAGATTTACCGAACATGCAATTAACACTTGAACGCATGGTGAAAAAAG
CAGGGATTGATGACGTTGAAACCTTTATGGAATTAGGAGCGATTGAAGTCTTTAATCGAGTTAAGCAAGCTTACGGTAAT
GACGTTGATGTCAAATTGCTATGGAAATTTGCTGGCGCGGTAGAAGGTATTCATTGGAAATTACTTCAAGAGCCCCGTCG
TAAACAACTTTTGGCAGCATGCTGCTAG

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(114-193)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L6H9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

74.227

99.487

0.738
  tfoX Vibrio parahaemolyticus RIMD 2210633

73.196

99.487

0.728
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

70.833

98.462

0.697
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

70.833

98.462

0.697
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

70.833

98.462

0.697
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

70.833

98.462

0.697
  tfoX Vibrio cholerae strain A1552

70.833

98.462

0.697
  tfoX Aliivibrio fischeri ES114

56.545

97.949

0.554

Multiple sequence alignment