Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   DV427_RS00855 Genome accession   NZ_CP031240
Coordinates   190494..191012 (+) Length   172 a.a.
NCBI ID   WP_114890978.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain M19345     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 185494..196012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV427_RS00835 nrfF 185661..186818 (-) 1158 WP_114890975.1 heme lyase NrfEFG subunit NrfF -
  DV427_RS00840 - 186815..187345 (-) 531 WP_114890976.1 DsbE family thiol:disulfide interchange protein -
  DV427_RS00845 nrfE 187345..189252 (-) 1908 WP_114890977.1 heme lyase NrfEFG subunit NrfE -
  DV427_RS00850 suhB 189491..190294 (-) 804 WP_005633301.1 inositol-1-monophosphatase -
  DV427_RS00855 comN 190494..191012 (+) 519 WP_114890978.1 type II secretion system protein Machinery gene
  DV427_RS00860 comO 191006..191722 (+) 717 WP_114892157.1 PulJ/GspJ family protein Machinery gene
  DV427_RS00865 comP 191737..192420 (+) 684 WP_114890979.1 DUF2572 family protein Machinery gene
  DV427_RS00870 comQ 192413..192700 (+) 288 WP_162790307.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19840.84 Da        Isoelectric Point: 8.7067

>NTDB_id=304451 DV427_RS00855 WP_114890978.1 190494..191012(+) (comN) [Haemophilus haemolyticus strain M19345]
MQKGVTLVELLIGLAIISIALSFAVPLWQTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNDQTCDCLNPTNCPKEAYAHFYYPYFPEKTMIQSHYIYPKEITRFYGARNTSVTRCFILQAENERTLFSFFNVGSIRL
KTNQAASACNQS

Nucleotide


Download         Length: 519 bp        

>NTDB_id=304451 DV427_RS00855 WP_114890978.1 190494..191012(+) (comN) [Haemophilus haemolyticus strain M19345]
ATGCAGAAAGGTGTGACATTAGTGGAATTATTGATTGGGTTAGCAATCATCAGTATAGCACTGAGTTTTGCCGTGCCATT
ATGGCAAACGGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATGATCAAACTTGCGATTGTTTAAACCCAACAAACTGCCCAAAAGAAGCCTATGCTCATTTTTACTATCCTTA
TTTTCCTGAAAAAACGATGATTCAAAGCCATTATATTTATCCCAAAGAAATCACGCGGTTTTATGGCGCTCGGAATACCA
GTGTTACTCGTTGCTTTATTCTACAAGCAGAAAATGAACGTACATTATTTTCATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACCAATCAAGCGGCTAGTGCATGCAATCAATCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

91.176

98.837

0.901

Multiple sequence alignment