Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LCHO_RS02790 | Genome accession | NC_010524 |
| Coordinates | 602524..603075 (-) | Length | 183 a.a. |
| NCBI ID | WP_012345592.1 | Uniprot ID | - |
| Organism | Leptothrix cholodnii SP-6 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 597524..608075
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCHO_RS02770 (Lcho_0551) | htpG | 597526..599430 (+) | 1905 | WP_012345588.1 | molecular chaperone HtpG | - |
| LCHO_RS02775 (Lcho_0552) | - | 599447..600529 (-) | 1083 | WP_012345589.1 | serine/threonine protein kinase | - |
| LCHO_RS21910 (Lcho_0553) | - | 600561..601370 (-) | 810 | WP_012345590.1 | DUF2726 domain-containing protein | - |
| LCHO_RS02785 (Lcho_0554) | - | 601622..602323 (-) | 702 | WP_012345591.1 | GNAT family N-acetyltransferase | - |
| LCHO_RS02790 (Lcho_0555) | ssb | 602524..603075 (-) | 552 | WP_012345592.1 | single-stranded DNA-binding protein | Machinery gene |
| LCHO_RS02795 (Lcho_0556) | - | 603234..605213 (+) | 1980 | WP_012345593.1 | RecQ family ATP-dependent DNA helicase | - |
| LCHO_RS02800 (Lcho_0557) | - | 605340..606557 (+) | 1218 | WP_012345594.1 | patatin-like phospholipase family protein | - |
| LCHO_RS02805 (Lcho_0558) | - | 606559..607404 (-) | 846 | WP_012345595.1 | DUF481 domain-containing protein | - |
| LCHO_RS02810 (Lcho_0559) | - | 607453..607950 (-) | 498 | WP_012345596.1 | Ig-like domain-containing protein | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 19572.63 Da Isoelectric Point: 5.4306
>NTDB_id=30436 LCHO_RS02790 WP_012345592.1 602524..603075(-) (ssb) [Leptothrix cholodnii SP-6]
MASVNKVILIGNLGRDPEVRYTPSGAAVCNVSVATTRNWKSKDGGERQEETEWHRVVFYDRLAEIAGEYLRKGRPVYVEG
RLKTRKWQDKEGRDQYTTEIVADQMQLLGGRESGGGGGGEMGAEEEMGGGGGRGGSSGGGYRREAPEGRAAPAPRASAPR
APAPAPAPKSSTGFDDMDDDIPF
MASVNKVILIGNLGRDPEVRYTPSGAAVCNVSVATTRNWKSKDGGERQEETEWHRVVFYDRLAEIAGEYLRKGRPVYVEG
RLKTRKWQDKEGRDQYTTEIVADQMQLLGGRESGGGGGGEMGAEEEMGGGGGRGGSSGGGYRREAPEGRAAPAPRASAPR
APAPAPAPKSSTGFDDMDDDIPF
Nucleotide
Download Length: 552 bp
>NTDB_id=30436 LCHO_RS02790 WP_012345592.1 602524..603075(-) (ssb) [Leptothrix cholodnii SP-6]
ATGGCCTCGGTCAACAAAGTCATTCTCATCGGCAACCTCGGGCGCGACCCGGAGGTGCGCTACACCCCCAGCGGCGCGGC
CGTCTGCAACGTCTCGGTCGCCACCACCCGCAACTGGAAGAGCAAGGACGGCGGCGAGCGCCAGGAAGAAACCGAATGGC
ACCGCGTGGTCTTCTACGACCGCCTGGCCGAGATCGCCGGCGAATACCTGCGCAAGGGCCGCCCGGTCTACGTCGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGAAGGCCGCGACCAGTACACCACCGAAATCGTCGCCGACCAGATGCAGTT
GCTCGGCGGCCGTGAAAGCGGCGGCGGCGGTGGCGGCGAGATGGGCGCCGAAGAAGAGATGGGCGGCGGTGGCGGACGCG
GCGGCAGCAGCGGCGGCGGCTATCGCCGCGAGGCGCCCGAAGGCCGCGCGGCCCCGGCCCCGCGTGCCAGCGCCCCGCGC
GCACCCGCCCCGGCACCGGCACCGAAGTCGTCCACCGGCTTCGACGACATGGACGACGACATTCCGTTCTGA
ATGGCCTCGGTCAACAAAGTCATTCTCATCGGCAACCTCGGGCGCGACCCGGAGGTGCGCTACACCCCCAGCGGCGCGGC
CGTCTGCAACGTCTCGGTCGCCACCACCCGCAACTGGAAGAGCAAGGACGGCGGCGAGCGCCAGGAAGAAACCGAATGGC
ACCGCGTGGTCTTCTACGACCGCCTGGCCGAGATCGCCGGCGAATACCTGCGCAAGGGCCGCCCGGTCTACGTCGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGAAGGCCGCGACCAGTACACCACCGAAATCGTCGCCGACCAGATGCAGTT
GCTCGGCGGCCGTGAAAGCGGCGGCGGCGGTGGCGGCGAGATGGGCGCCGAAGAAGAGATGGGCGGCGGTGGCGGACGCG
GCGGCAGCAGCGGCGGCGGCTATCGCCGCGAGGCGCCCGAAGGCCGCGCGGCCCCGGCCCCGCGTGCCAGCGCCCCGCGC
GCACCCGCCCCGGCACCGGCACCGAAGTCGTCCACCGGCTTCGACGACATGGACGACGACATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
49.206 |
100 |
0.508 |
| ssb | Glaesserella parasuis strain SC1401 |
49.727 |
100 |
0.497 |
| ssb | Neisseria gonorrhoeae MS11 |
48.663 |
100 |
0.497 |
| ssb | Neisseria meningitidis MC58 |
48.387 |
100 |
0.492 |