Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DV365_RS00570 Genome accession   NZ_CP031237
Coordinates   112093..112890 (+) Length   265 a.a.
NCBI ID   WP_114890067.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M12125     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 107093..117890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV365_RS00550 recR 107265..107867 (-) 603 WP_005626527.1 recombination mediator RecR -
  DV365_RS00555 - 108000..108329 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  DV365_RS00560 - 108478..109323 (-) 846 WP_114890065.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  DV365_RS00565 - 109400..111994 (-) 2595 WP_114890066.1 penicillin-binding protein 1A -
  DV365_RS00570 comA 112093..112890 (+) 798 WP_114890067.1 competence protein ComA Machinery gene
  DV365_RS00575 comB 112891..113397 (+) 507 WP_114890068.1 competence protein ComB Machinery gene
  DV365_RS00580 comC 113394..113915 (+) 522 WP_048951462.1 competence protein ComC Machinery gene
  DV365_RS00585 comD 113912..114325 (+) 414 WP_005693727.1 pilus assembly protein PilP Machinery gene
  DV365_RS00590 comE 114335..115672 (+) 1338 WP_114890069.1 type IV pilus secretin PilQ family protein Machinery gene
  DV365_RS00595 - 115685..116371 (+) 687 WP_032823982.1 ComF family protein -
  DV365_RS00600 nfuA 116447..117043 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31486.96 Da        Isoelectric Point: 6.2315

>NTDB_id=304348 DV365_RS00570 WP_114890067.1 112093..112890(+) (comA) [Haemophilus influenzae strain M12125]
MQFSLKNYCTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSIAQTYLQDFQPFKINVLDVASNAILRA
FQYLLNAQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLLENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=304348 DV365_RS00570 WP_114890067.1 112093..112890(+) (comA) [Haemophilus influenzae strain M12125]
ATGCAATTCTCCCTGAAAAATTACTGCACTTTACAAATCGGCATTCATCGTAAGCAGAGTTATTTTGATTTTGTGTGGTT
TGATGATCTCGAACAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
TTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCGTCAAATGCTATTTTGCGTGCA
TTTCAGTATTTGTTGAATGCTCAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACTAGAAAATTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCACTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

97.358

100

0.974
  comA Haemophilus influenzae 86-028NP

96.226

100

0.962

Multiple sequence alignment