Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | DV365_RS00575 | Genome accession | NZ_CP031237 |
| Coordinates | 112891..113397 (+) | Length | 168 a.a. |
| NCBI ID | WP_114890068.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain M12125 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 107891..118397
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DV365_RS00555 | - | 108000..108329 (-) | 330 | WP_005629464.1 | YbaB/EbfC family nucleoid-associated protein | - |
| DV365_RS00560 | - | 108478..109323 (-) | 846 | WP_114890065.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| DV365_RS00565 | - | 109400..111994 (-) | 2595 | WP_114890066.1 | penicillin-binding protein 1A | - |
| DV365_RS00570 | comA | 112093..112890 (+) | 798 | WP_114890067.1 | competence protein ComA | Machinery gene |
| DV365_RS00575 | comB | 112891..113397 (+) | 507 | WP_114890068.1 | competence protein ComB | Machinery gene |
| DV365_RS00580 | comC | 113394..113915 (+) | 522 | WP_048951462.1 | competence protein ComC | Machinery gene |
| DV365_RS00585 | comD | 113912..114325 (+) | 414 | WP_005693727.1 | pilus assembly protein PilP | Machinery gene |
| DV365_RS00590 | comE | 114335..115672 (+) | 1338 | WP_114890069.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| DV365_RS00595 | - | 115685..116371 (+) | 687 | WP_032823982.1 | ComF family protein | - |
| DV365_RS00600 | nfuA | 116447..117043 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| DV365_RS00605 | nudC | 117110..117904 (+) | 795 | WP_114890070.1 | NAD(+) diphosphatase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19652.56 Da Isoelectric Point: 8.9494
>NTDB_id=304349 DV365_RS00575 WP_114890068.1 112891..113397(+) (comB) [Haemophilus influenzae strain M12125]
MSMNLLPWRTYQHQKRLRRLAFYIALCILLAINLMLAFSNLIEQQKQNLQAQQTSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGKLNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
MSMNLLPWRTYQHQKRLRRLAFYIALCILLAINLMLAFSNLIEQQKQNLQAQQTSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGKLNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
Nucleotide
Download Length: 507 bp
>NTDB_id=304349 DV365_RS00575 WP_114890068.1 112891..113397(+) (comB) [Haemophilus influenzae strain M12125]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATG
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTCACAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAAA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATG
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTCACAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAAA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
98.81 |
100 |
0.988 |
| comB | Haemophilus influenzae Rd KW20 |
97.619 |
100 |
0.976 |