Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HSM_RS05420 Genome accession   NC_010519
Coordinates   1205048..1205512 (-) Length   154 a.a.
NCBI ID   WP_011609284.1    Uniprot ID   A0A9Q6Z0H2
Organism   Histophilus somni 2336     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1200048..1210512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSM_RS05390 (HSM_1042) focA 1200465..1201316 (-) 852 WP_012340233.1 formate transporter FocA -
  HSM_RS05395 (HSM_1043) hinT 1201560..1201910 (+) 351 WP_012340234.1 purine nucleoside phosphoramidase -
  HSM_RS05400 (HSM_1044) - 1201910..1202266 (+) 357 WP_012340235.1 YcfL family protein -
  HSM_RS05405 (HSM_1045) nagZ 1202273..1203319 (+) 1047 WP_012340236.1 beta-N-acetylhexosaminidase -
  HSM_RS05410 (HSM_1046) - 1203348..1203866 (+) 519 WP_012340237.1 ClbS/DfsB family four-helix bundle protein -
  HSM_RS05415 (HSM_1047) metF 1204077..1204961 (+) 885 WP_012340238.1 methylenetetrahydrofolate reductase -
  HSM_RS05420 (HSM_1048) ssb 1205048..1205512 (-) 465 WP_011609284.1 single-stranded DNA-binding protein Machinery gene
  HSM_RS05425 (HSM_1049) uvrA 1205691..1208522 (+) 2832 WP_012340239.1 excinuclease ABC subunit UvrA -
  HSM_RS05430 (HSM_1050) - 1208694..1209749 (+) 1056 WP_011609282.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17419.34 Da        Isoelectric Point: 5.7904

>NTDB_id=30402 HSM_RS05420 WP_011609284.1 1205048..1205512(-) (ssb) [Histophilus somni 2336]
MAGVNKVIIVGNLGNAPEIRTMPNGDAVANISVATSESWIDKNTNERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRSDRGQMGGYEPQQQPTYQSHSQPKPSIASPSPVDAPLDDDIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=30402 HSM_RS05420 WP_011609284.1 1205048..1205512(-) (ssb) [Histophilus somni 2336]
ATGGCTGGAGTAAATAAAGTAATCATTGTTGGAAATCTTGGTAACGCTCCTGAAATTCGCACCATGCCAAACGGTGATGC
TGTTGCGAATATCAGTGTTGCAACAAGTGAAAGTTGGATTGATAAAAATACCAATGAACGCCGTGAAATTACAGAATGGC
ATCGCATCGTGTTTTATCGTCGTCAAGCAGAAGTGGCTGGAGAATATTTACGTAAAGGCTCAAAGGTTTATGTAGAAGGA
CGTTTAAGAACACGCAAATGGCAAGATCAAAATGGTCAAGATCGTTATACCACTGAAATTCAGGGCGATGTATTGCAAAT
GCTGGATAGTCGTTCAGATCGTGGACAAATGGGAGGATACGAACCTCAACAGCAACCAACCTACCAATCACATTCTCAAC
CTAAACCGAGCATTGCATCTCCATCACCTGTTGATGCTCCACTTGATGATGACATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

63.536

100

0.747
  ssb Vibrio cholerae strain A1552

52.247

100

0.604
  ssb Neisseria gonorrhoeae MS11

44.828

100

0.506
  ssb Neisseria meningitidis MC58

44.509

100

0.5

Multiple sequence alignment