Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DV527_RS08065 Genome accession   NZ_CP031196
Coordinates   1644396..1645271 (-) Length   291 a.a.
NCBI ID   WP_145437571.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain 1A     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1639396..1650271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV527_RS08050 (DV527_08065) xerC 1639653..1640543 (-) 891 WP_145437569.1 tyrosine recombinase XerC -
  DV527_RS08055 (DV527_08070) trmFO 1640662..1641969 (-) 1308 WP_145437570.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DV527_RS08060 (DV527_08075) topA 1642124..1644190 (-) 2067 WP_002483473.1 type I DNA topoisomerase -
  DV527_RS08065 (DV527_08080) dprA 1644396..1645271 (-) 876 WP_145437571.1 DNA-processing protein DprA Machinery gene
  DV527_RS08070 (DV527_08085) sucD 1645579..1646484 (-) 906 WP_145437572.1 succinate--CoA ligase subunit alpha -
  DV527_RS08075 (DV527_08090) sucC 1646506..1647672 (-) 1167 WP_002483476.1 ADP-forming succinate--CoA ligase subunit beta -
  DV527_RS08080 (DV527_08095) - 1647780..1648550 (-) 771 WP_041080446.1 ribonuclease HII -
  DV527_RS08085 (DV527_08100) ylqF 1648557..1649417 (-) 861 WP_037538552.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33756.48 Da        Isoelectric Point: 10.3610

>NTDB_id=304018 DV527_RS08065 WP_145437571.1 1644396..1645271(-) (dprA) [Staphylococcus saprophyticus strain 1A]
MNDLDLLKLRFAGLSTQQIHRLLRFSPSFMKYSKVDKQYILKQFLGTVKITAKNENVYRLYVTINFEVLFKQLKAWKVHF
ITINHRLYPQLLREIYDPPLILFYRGKLTLMQSPRTLAIIGSRQATQYTWQSLQTFFPSFKKHHLTIISGLAKGADMMAH
QHALLFKLPTIAVLGFGHMHHYPKETKEIRQQIEKDGIVISEYLPLEKPKRYHFPERNRLISGLSKGIFITESAENSGTS
ITTRFALEQNRDVYVLPGTIFNKMTLGNLRSAQEGAKIVLNADDILEDFII

Nucleotide


Download         Length: 876 bp        

>NTDB_id=304018 DV527_RS08065 WP_145437571.1 1644396..1645271(-) (dprA) [Staphylococcus saprophyticus strain 1A]
ATGAACGATTTAGACCTTTTAAAGCTTCGATTTGCTGGACTATCTACACAACAAATACATCGATTATTAAGATTTTCTCC
CTCTTTTATGAAATATAGTAAGGTAGATAAACAATACATACTCAAACAATTTTTGGGAACAGTAAAAATAACTGCAAAAA
ATGAAAATGTATACCGATTATATGTGACAATTAATTTTGAAGTACTATTCAAACAATTAAAAGCATGGAAAGTTCATTTC
ATAACAATTAATCACCGTTTATATCCACAGTTATTGCGAGAAATTTATGATCCACCCCTAATCCTATTTTATCGCGGTAA
GCTTACTTTAATGCAATCTCCTCGTACCCTAGCTATTATTGGATCTAGACAAGCGACACAATATACATGGCAATCACTTC
AAACATTTTTTCCTTCATTTAAAAAACATCATTTGACGATAATATCAGGGCTTGCAAAAGGTGCAGATATGATGGCGCAT
CAACATGCTTTGTTATTTAAGTTACCTACAATTGCGGTATTAGGATTTGGACATATGCATCATTATCCGAAAGAAACTAA
AGAGATAAGACAGCAAATTGAAAAAGATGGAATAGTTATAAGTGAATATCTCCCTCTCGAAAAGCCCAAAAGATACCATT
TCCCAGAAAGGAATAGATTGATTAGTGGACTTTCTAAAGGTATCTTTATCACAGAATCTGCAGAAAATAGTGGCACAAGT
ATCACGACGCGATTTGCATTAGAACAAAATAGAGATGTGTATGTCTTACCTGGTACAATATTTAATAAAATGACATTAGG
CAATTTGCGTAGTGCTCAAGAAGGTGCGAAAATTGTATTGAATGCGGATGATATATTAGAAGATTTTATTATATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

50.338

100

0.512
  dprA Staphylococcus aureus MW2

50.338

100

0.512
  dprA Lactococcus lactis subsp. cremoris KW2

38.966

99.656

0.388
  dprA Vibrio campbellii strain DS40M4

36.949

100

0.375
  dprA/cilB/dalA Streptococcus mitis SK321

36.207

99.656

0.361

Multiple sequence alignment