Detailed information NTG0303837

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: MG068_RS16390
• Genome accession: NZ_CP031167
• Coordinates: 3525820..3527193 (+)
• Length: 457 a.a.
• NCBI ID: WP_032128822.1
• Uniprot ID: A0AA42I7K3
• Organism: Stenotrophomonas sp. ASS1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3520820..3532193

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MG068_RS16375 (MG068_16330)	sucD	3521675..3522550 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
MG068_RS16380 (MG068_16335)	sucC	3522571..3523740 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
MG068_RS16385 (MG068_16340)	-	3524146..3525759 (+)	1614	WP_049401617.1	ATP-binding protein	-
MG068_RS16390 (MG068_16345)	pilR	3525820..3527193 (+)	1374	WP_032128822.1	sigma-54 dependent transcriptional regulator	Regulator
MG068_RS16395 (MG068_16350)	pilB	3527420..3529147 (-)	1728	WP_132810679.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MG068_RS16400 (MG068_16355)	-	3529438..3529881 (-)	444	WP_132810680.1	pilin	-
MG068_RS16405 (MG068_16360)	pilC	3530242..3531501 (+)	1260	WP_132810681.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49493.79 Da
• Isoelectric Point: 6.5844

>NTDB_id=303837 MG068_RS16390 WP_032128822.1 3525820..3527193(+) (pilR) [Stenotrophomonas sp. ASS1]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNTERPAPGPATEQAARLLGASPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHRDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAHYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRAPGGAAPAEAV
ADLQPGGAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=303837 MG068_RS16390 WP_032128822.1 3525820..3527193(+) (pilR) [Stenotrophomonas sp. ASS1]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGACATCCGCGAACTGCTGGTACTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACTGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAGCAACCCGTACGACCTGTGCATCA
CCGACATGCGCCTTCCGGATGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACACCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAACTCAACAACACCGAACGCCCTGCGCCCGGCCCCGCCA
CCGAACAGGCTGCACGCCTGCTCGGCGCTTCGCCGGCCATGGACGTTCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGTGAATCGGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCACGCCCAGGGCGCGCG
TGCGGCTGGTCCGTTCGTGCCGGTCAACTGCGGTGCCATTCCCGGCGAGCTGATGGAGAGCGAGTTCTTCGGCCATCGCA
AAGGCAGCTTCAGCGGCGCCCATGCCGACAAGCCGGGCCTGTTCCAGGCTGCACATGGCGGCACCCTGTTCCTGGACGAA
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGTTGCGTGCCATCCAGGAAAAGTCGGTACGTGCGGTGGGTGCGGC
CAACGAAGAACCGGTGGACGTGCGCATTCTCTCGGCCACGCACCGTGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATTGAACTGAAGGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCGGAA
CTGGCTGCCGCCGTGCTGGCGCGGCTGGCCCGCAGCCACGGCCGTGCCACACCGCTGCTGGCGCCATCGGCGCTGGAAGC
GCTGGCCCACTACGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATTCTGGAGCGCGCGCTGGCACTGGCCGAAGAAG
ACCGCATTGGTGCCGACGACCTGCGCCTGCCGCAGCACGCCCCACGTGCGCCCGGCGGCGCTGCTCCCGCCGAAGCCGTG
GCCGACCTGCAGCCGGGCGGTGCCGCCCTGCCCTCGTACATCGAGCAGCTGGAGCGCAGCGCCATCCAGCGCGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGCACGGCTGCGCAGCTGGGGATTACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.281	99.781	0.621
pilR	Acinetobacter baumannii strain A118	47.732	100	0.484