Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ETT44_RS08940 Genome accession   NZ_CP035455
Coordinates   1728693..1729289 (-) Length   198 a.a.
NCBI ID   WP_002992186.1    Uniprot ID   P0DF49
Organism   Streptococcus pyogenes strain emm197     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1723693..1734289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT44_RS08905 (ETT44_08895) - 1723754..1724059 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  ETT44_RS08910 (ETT44_08900) ruvX 1724071..1724490 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  ETT44_RS08915 (ETT44_08905) - 1724487..1724756 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  ETT44_RS08920 (ETT44_08910) spx 1724869..1725267 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  ETT44_RS08925 (ETT44_08915) recA 1725558..1726694 (-) 1137 WP_002982186.1 recombinase RecA Machinery gene
  ETT44_RS08930 (ETT44_08920) cinA 1726783..1728054 (-) 1272 WP_115346619.1 competence/damage-inducible protein A Machinery gene
  ETT44_RS08935 (ETT44_08925) - 1728123..1728683 (-) 561 WP_136021841.1 DNA-3-methyladenine glycosylase I -
  ETT44_RS08940 (ETT44_08930) ruvA 1728693..1729289 (-) 597 WP_002992186.1 Holliday junction branch migration protein RuvA Machinery gene
  ETT44_RS08945 (ETT44_08935) - 1729291..1730511 (-) 1221 WP_002992187.1 MFS transporter -
  ETT44_RS08950 (ETT44_08940) hexB 1730522..1732504 (-) 1983 WP_002992189.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21879.26 Da        Isoelectric Point: 6.8838

>NTDB_id=303602 ETT44_RS08940 WP_002992186.1 1728693..1729289(-) (ruvA) [Streptococcus pyogenes strain emm197]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGHTKARSNKAGNTQLDEAIEAL
LALGYKAKELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=303602 ETT44_RS08940 WP_002992186.1 1728693..1729289(-) (ruvA) [Streptococcus pyogenes strain emm197]
ATGTACGACTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTCATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAAGCAAAAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATA
CATCAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0DF49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae R6

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae D39

65.99

99.495

0.657
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.419