Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   XFASM12_RS03440 Genome accession   NC_010513
Coordinates   802267..802761 (+) Length   164 a.a.
NCBI ID   WP_004083791.1    Uniprot ID   Q9PDI7
Organism   Xylella fastidiosa M12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 797267..807761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFASM12_RS03425 (Xfasm12_0740) cyoB 797604..799601 (-) 1998 WP_004083794.1 cytochrome o ubiquinol oxidase subunit I -
  XFASM12_RS03430 (Xfasm12_0741) cyoA 799595..800554 (-) 960 WP_004083793.1 ubiquinol oxidase subunit II -
  XFASM12_RS03435 (Xfasm12_0742) - 801017..802018 (-) 1002 WP_004083792.1 polyprenyl synthetase family protein -
  XFASM12_RS03440 (Xfasm12_0743) ssb 802267..802761 (+) 495 WP_004083791.1 single-stranded DNA-binding protein Machinery gene
  XFASM12_RS03445 (Xfasm12_0745) - 804358..805268 (+) 911 Protein_671 class I SAM-dependent methyltransferase -
  XFASM12_RS03450 (Xfasm12_0746) - 805573..806769 (+) 1197 WP_027700010.1 cation:proton antiporter -
  XFASM12_RS03455 (Xfasm12_0747) gloA 806931..807458 (-) 528 WP_004083787.1 lactoylglutathione lyase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18211.20 Da        Isoelectric Point: 5.9575

>NTDB_id=30355 XFASM12_RS03440 WP_004083791.1 802267..802761(+) (ssb) [Xylella fastidiosa M12]
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQARQPSQSPQSSPPPMDDFADD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=30355 XFASM12_RS03440 WP_004083791.1 802267..802761(+) (ssb) [Xylella fastidiosa M12]
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAACCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTTCGTAAGGACAAGGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATTCGCTATGACAAGTTCACTGGCCAGGATGGTCAGGAGCGCTATGTTACAGAGATTGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGCGATGGTGGCGGTATGGGCGGGGGCGGTGAGCGCCCACAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGGCCCGTCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PDI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.153

100

0.53
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.5
  ssb Neisseria meningitidis MC58

41.618

100

0.439
  ssb Neisseria gonorrhoeae MS11

41.04

100

0.433

Multiple sequence alignment