Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DTO96_RS04920 | Genome accession | NZ_CP031124 |
| Coordinates | 1060383..1060841 (-) | Length | 152 a.a. |
| NCBI ID | WP_114562477.1 | Uniprot ID | A0A345DA70 |
| Organism | Ephemeroptericola cinctiostellae strain F02 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1055383..1065841
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DTO96_RS04895 (DTO96_100979) | ccoO | 1056051..1056665 (+) | 615 | WP_114562472.1 | cytochrome-c oxidase, cbb3-type subunit II | - |
| DTO96_RS04900 (DTO96_100980) | - | 1056670..1056846 (+) | 177 | WP_114562473.1 | CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone | - |
| DTO96_RS04905 (DTO96_100981) | ccoP | 1056918..1058090 (+) | 1173 | WP_114562474.1 | cytochrome-c oxidase, cbb3-type subunit III | - |
| DTO96_RS04910 (DTO96_100982) | ccoG | 1058321..1059805 (+) | 1485 | WP_114562475.1 | cytochrome c oxidase accessory protein CcoG | - |
| DTO96_RS04915 (DTO96_100983) | - | 1059811..1060320 (+) | 510 | WP_114562476.1 | FixH family protein | - |
| DTO96_RS04920 (DTO96_100984) | ssb | 1060383..1060841 (-) | 459 | WP_114562477.1 | single-stranded DNA-binding protein | Machinery gene |
| DTO96_RS04925 (DTO96_100985) | pdxH | 1060978..1061616 (-) | 639 | WP_114563927.1 | pyridoxamine 5'-phosphate oxidase | - |
| DTO96_RS04930 (DTO96_100986) | - | 1061815..1062915 (+) | 1101 | WP_157964326.1 | 3-hydroxyisobutyryl-CoA hydrolase | - |
| DTO96_RS04935 (DTO96_100987) | thrS | 1063289..1065196 (+) | 1908 | WP_114562479.1 | threonine--tRNA ligase | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 16428.41 Da Isoelectric Point: 5.3042
>NTDB_id=303492 DTO96_RS04920 WP_114562477.1 1060383..1060841(-) (ssb) [Ephemeroptericola cinctiostellae strain F02]
MASVNKVTVLGNLGRDPEIRYTPSNMAIATVSIATTYKAKDREPETEWHRVVFFGRQAEVAGEYLKKGSSVYVEGRLRTQ
KWTDKNGVERYTTEIIAESMQMLGGKASGGGGGEPYDMPAAGESRSTPSSAPAPRAKPAPAAMDDLDDDIPF
MASVNKVTVLGNLGRDPEIRYTPSNMAIATVSIATTYKAKDREPETEWHRVVFFGRQAEVAGEYLKKGSSVYVEGRLRTQ
KWTDKNGVERYTTEIIAESMQMLGGKASGGGGGEPYDMPAAGESRSTPSSAPAPRAKPAPAAMDDLDDDIPF
Nucleotide
Download Length: 459 bp
>NTDB_id=303492 DTO96_RS04920 WP_114562477.1 1060383..1060841(-) (ssb) [Ephemeroptericola cinctiostellae strain F02]
ATGGCATCCGTCAATAAAGTCACCGTCCTCGGCAACCTCGGCCGCGACCCAGAAATTCGTTATACCCCCAGTAATATGGC
GATTGCCACAGTCAGCATCGCCACCACTTACAAAGCCAAAGATCGCGAACCTGAAACCGAATGGCATCGCGTAGTGTTCT
TTGGTCGCCAAGCCGAAGTGGCGGGTGAATATTTGAAAAAAGGCTCTTCAGTCTACGTCGAAGGTCGCTTACGCACTCAA
AAATGGACTGACAAAAACGGCGTTGAACGCTACACCACTGAGATCATTGCTGAAAGCATGCAAATGCTGGGCGGCAAAGC
ATCGGGCGGTGGTGGCGGTGAACCATATGACATGCCTGCCGCTGGCGAATCACGTTCAACTCCCTCATCGGCTCCTGCCC
CTCGCGCAAAACCTGCACCTGCTGCGATGGACGACTTAGACGACGACATCCCATTCTAA
ATGGCATCCGTCAATAAAGTCACCGTCCTCGGCAACCTCGGCCGCGACCCAGAAATTCGTTATACCCCCAGTAATATGGC
GATTGCCACAGTCAGCATCGCCACCACTTACAAAGCCAAAGATCGCGAACCTGAAACCGAATGGCATCGCGTAGTGTTCT
TTGGTCGCCAAGCCGAAGTGGCGGGTGAATATTTGAAAAAAGGCTCTTCAGTCTACGTCGAAGGTCGCTTACGCACTCAA
AAATGGACTGACAAAAACGGCGTTGAACGCTACACCACTGAGATCATTGCTGAAAGCATGCAAATGCTGGGCGGCAAAGC
ATCGGGCGGTGGTGGCGGTGAACCATATGACATGCCTGCCGCTGGCGAATCACGTTCAACTCCCTCATCGGCTCCTGCCC
CTCGCGCAAAACCTGCACCTGCTGCGATGGACGACTTAGACGACGACATCCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
44.262 |
100 |
0.533 |
| ssb | Vibrio cholerae strain A1552 |
44.633 |
100 |
0.52 |
| ssb | Neisseria meningitidis MC58 |
43.353 |
100 |
0.493 |
| ssb | Neisseria gonorrhoeae MS11 |
43.353 |
100 |
0.493 |