Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PY32053_RS10965 | Genome accession | NZ_CP031078 |
| Coordinates | 2221938..2222414 (+) | Length | 158 a.a. |
| NCBI ID | WP_120442261.1 | Uniprot ID | A0A386UNE0 |
| Organism | Paracoccus yeei strain CCUG 32053 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2221077..2243490 | 2221938..2222414 | within | 0 |
| IS/Tn | 2222918..2223850 | 2221938..2222414 | flank | 504 |
Gene organization within MGE regions
Location: 2221077..2243490
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PY32053_RS10960 (PY32053_02281) | - | 2221077..2221715 (-) | 639 | WP_099647954.1 | lytic transglycosylase domain-containing protein | - |
| PY32053_RS10965 (PY32053_02282) | ssb | 2221938..2222414 (+) | 477 | WP_120442261.1 | single-stranded DNA-binding protein | Machinery gene |
| PY32053_RS23010 | - | 2222708..2222896 (+) | 189 | WP_147405553.1 | hypothetical protein | - |
| PY32053_RS10970 (PY32053_02285) | - | 2222918..2223850 (-) | 933 | WP_120440378.1 | IS5 family transposase | - |
| PY32053_RS10980 (PY32053_02288) | tig | 2224455..2225789 (+) | 1335 | WP_099647956.1 | trigger factor | - |
| PY32053_RS10985 (PY32053_02289) | - | 2226160..2227035 (+) | 876 | WP_028719825.1 | hypothetical protein | - |
| PY32053_RS10990 (PY32053_02290) | - | 2227073..2227324 (-) | 252 | WP_028719824.1 | DUF2312 domain-containing protein | - |
| PY32053_RS10995 (PY32053_02291) | - | 2227413..2227640 (+) | 228 | WP_190941406.1 | hypothetical protein | - |
| PY32053_RS11000 (PY32053_02292) | dtd | 2227644..2228093 (+) | 450 | WP_120442265.1 | D-aminoacyl-tRNA deacylase | - |
| PY32053_RS11005 (PY32053_02293) | - | 2228325..2229761 (+) | 1437 | WP_120442267.1 | DEAD/DEAH box helicase | - |
| PY32053_RS11010 (PY32053_02294) | - | 2229831..2230409 (+) | 579 | WP_120442269.1 | thymidine kinase | - |
| PY32053_RS11015 (PY32053_02295) | - | 2230406..2231650 (+) | 1245 | WP_120442271.1 | cytochrome b/b6 domain-containing protein | - |
| PY32053_RS11020 (PY32053_02296) | - | 2231647..2234304 (-) | 2658 | WP_120442273.1 | calcium-binding protein | - |
| PY32053_RS11025 (PY32053_02297) | cueR | 2234950..2235384 (-) | 435 | WP_112888181.1 | Cu(I)-responsive transcriptional regulator | - |
| PY32053_RS11030 (PY32053_02298) | - | 2235381..2237852 (-) | 2472 | WP_120442275.1 | heavy metal translocating P-type ATPase | - |
| PY32053_RS11035 (PY32053_02299) | - | 2237858..2238250 (-) | 393 | WP_120442277.1 | DUF305 domain-containing protein | - |
| PY32053_RS11040 (PY32053_02300) | - | 2238260..2238454 (-) | 195 | WP_120442279.1 | heavy-metal-associated domain-containing protein | - |
| PY32053_RS11045 (PY32053_02301) | - | 2238569..2239393 (-) | 825 | WP_120442281.1 | ABC transporter permease | - |
| PY32053_RS11050 (PY32053_02302) | - | 2239390..2240217 (-) | 828 | WP_120442283.1 | ABC transporter permease | - |
| PY32053_RS11055 (PY32053_02303) | - | 2240229..2241290 (-) | 1062 | WP_028719403.1 | quaternary amine ABC transporter ATP-binding protein | - |
| PY32053_RS11060 (PY32053_02304) | - | 2241359..2242210 (-) | 852 | WP_028719404.1 | glycine betaine ABC transporter substrate-binding protein | - |
| PY32053_RS11065 (PY32053_02305) | - | 2242513..2243490 (-) | 978 | WP_233577647.1 | LysR substrate-binding domain-containing protein | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17288.98 Da Isoelectric Point: 5.9787
>NTDB_id=303244 PY32053_RS10965 WP_120442261.1 2221938..2222414(+) (ssb) [Paracoccus yeei strain CCUG 32053]
MAGSVNKVILIGNLGQDPEIRSFQNGGKIANLRIATSETWKDRNTGERKERTEWHTVAIYSEPLVRVAEQYLKKGSKVYV
EGQLETRKWQDQQGNDRYSTEVALRPFRSELTMLDGRGGSGGGGGGGRGDEGYGYEGGGSGRSSSPASRPDFDDEIPF
MAGSVNKVILIGNLGQDPEIRSFQNGGKIANLRIATSETWKDRNTGERKERTEWHTVAIYSEPLVRVAEQYLKKGSKVYV
EGQLETRKWQDQQGNDRYSTEVALRPFRSELTMLDGRGGSGGGGGGGRGDEGYGYEGGGSGRSSSPASRPDFDDEIPF
Nucleotide
Download Length: 477 bp
>NTDB_id=303244 PY32053_RS10965 WP_120442261.1 2221938..2222414(+) (ssb) [Paracoccus yeei strain CCUG 32053]
ATGGCAGGCAGCGTGAACAAGGTGATCCTGATCGGCAATCTGGGTCAAGACCCCGAGATCCGCAGCTTCCAGAACGGCGG
CAAGATCGCCAACCTGCGGATTGCGACCTCCGAGACCTGGAAGGACCGCAACACCGGCGAACGCAAGGAACGCACCGAGT
GGCACACCGTCGCCATCTATTCGGAGCCCCTGGTCCGCGTGGCCGAGCAATACCTGAAGAAGGGCAGCAAGGTCTATGTC
GAGGGCCAGCTGGAAACCCGCAAATGGCAGGACCAGCAAGGCAACGACCGCTATTCGACCGAGGTGGCGCTGCGTCCCTT
CCGCAGCGAGCTGACCATGCTCGACGGCCGTGGCGGCTCGGGCGGCGGTGGCGGCGGCGGTCGTGGCGATGAGGGCTATG
GCTACGAAGGCGGCGGCTCGGGCCGCAGCTCCTCTCCTGCCAGCCGTCCCGATTTCGACGACGAGATCCCGTTCTGA
ATGGCAGGCAGCGTGAACAAGGTGATCCTGATCGGCAATCTGGGTCAAGACCCCGAGATCCGCAGCTTCCAGAACGGCGG
CAAGATCGCCAACCTGCGGATTGCGACCTCCGAGACCTGGAAGGACCGCAACACCGGCGAACGCAAGGAACGCACCGAGT
GGCACACCGTCGCCATCTATTCGGAGCCCCTGGTCCGCGTGGCCGAGCAATACCTGAAGAAGGGCAGCAAGGTCTATGTC
GAGGGCCAGCTGGAAACCCGCAAATGGCAGGACCAGCAAGGCAACGACCGCTATTCGACCGAGGTGGCGCTGCGTCCCTT
CCGCAGCGAGCTGACCATGCTCGACGGCCGTGGCGGCTCGGGCGGCGGTGGCGGCGGCGGTCGTGGCGATGAGGGCTATG
GCTACGAAGGCGGCGGCTCGGGCCGCAGCTCCTCTCCTGCCAGCCGTCCCGATTTCGACGACGAGATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
50.286 |
100 |
0.557 |
| ssb | Glaesserella parasuis strain SC1401 |
45.213 |
100 |
0.538 |
| ssb | Neisseria meningitidis MC58 |
41.341 |
100 |
0.468 |
| ssb | Neisseria gonorrhoeae MS11 |
40.782 |
100 |
0.462 |