Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DN405_RS27030 Genome accession   NZ_CP031065
Coordinates   5228054..5228566 (-) Length   170 a.a.
NCBI ID   WP_000981966.1    Uniprot ID   A0A0A3WKS9
Organism   Bacillus sp. SH8-8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5223054..5233566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN405_RS27010 (DN405_26995) rplI 5224265..5224711 (-) 447 WP_000864228.1 50S ribosomal protein L9 -
  DN405_RS27015 (DN405_27000) - 5224708..5226681 (-) 1974 WP_001113785.1 DHH family phosphoesterase -
  DN405_RS27020 (DN405_27005) - 5226760..5227695 (-) 936 WP_000814837.1 YybS family protein -
  DN405_RS27025 (DN405_27010) rpsR 5227775..5228008 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  DN405_RS27030 (DN405_27015) ssbA 5228054..5228566 (-) 513 WP_000981966.1 single-stranded DNA-binding protein Machinery gene
  DN405_RS27035 (DN405_27020) rpsF 5228593..5228883 (-) 291 WP_001233778.1 30S ribosomal protein S6 -
  DN405_RS27040 (DN405_27025) ychF 5229075..5230175 (-) 1101 WP_000524657.1 redox-regulated ATPase YchF -
  DN405_RS27045 (DN405_27030) - 5230291..5230488 (-) 198 WP_000435485.1 DUF951 domain-containing protein -
  DN405_RS27050 (DN405_27035) - 5230509..5231390 (-) 882 WP_000364814.1 mechanosensitive ion channel family protein -
  DN405_RS27055 (DN405_27040) yyaC 5231650..5232246 (+) 597 WP_001020714.1 spore protease YyaC -
  DN405_RS27060 (DN405_27045) spo0J 5232267..5233118 (-) 852 WP_001051832.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18494.29 Da        Isoelectric Point: 4.9327

>NTDB_id=303138 DN405_RS27030 WP_000981966.1 5228054..5228566(-) (ssbA) [Bacillus sp. SH8-8]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=303138 DN405_RS27030 WP_000981966.1 5228054..5228566(-) (ssbA) [Bacillus sp. SH8-8]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTCGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAGCAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTGCAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3WKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.43

100

0.394

Multiple sequence alignment