Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Xcom_RS08185 Genome accession   NZ_CP031059
Coordinates   1878681..1879214 (+) Length   177 a.a.
NCBI ID   WP_008572410.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. commiphoreae strain LMG 26789     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1873681..1884214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Xcom_RS08165 (Xcom_08170) murD 1874665..1876071 (+) 1407 WP_011348101.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  Xcom_RS08175 (Xcom_08180) - 1876401..1877201 (+) 801 WP_008572408.1 dienelactone hydrolase family protein -
  Xcom_RS08180 (Xcom_08185) - 1877407..1878405 (-) 999 WP_011348098.1 polyprenyl synthetase family protein -
  Xcom_RS08185 (Xcom_08190) ssb 1878681..1879214 (+) 534 WP_008572410.1 single-stranded DNA-binding protein Machinery gene
  Xcom_RS08190 (Xcom_08195) - 1879500..1881047 (-) 1548 WP_184419901.1 sensor domain-containing diguanylate cyclase -
  Xcom_RS08195 (Xcom_08200) - 1881272..1882243 (+) 972 WP_122272528.1 NAD(P)-dependent alcohol dehydrogenase -
  Xcom_RS08200 (Xcom_08205) paoA 1882672..1883322 (+) 651 WP_029819880.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18924.78 Da        Isoelectric Point: 5.3095

>NTDB_id=303009 Xcom_RS08185 WP_008572410.1 1878681..1879214(+) (ssb) [Xanthomonas axonopodis pv. commiphoreae strain LMG 26789]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGGQGGGYGGGGGGQDYAPRRQQPAQ
QQSAPPMDDFADDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=303009 Xcom_RS08185 WP_008572410.1 1878681..1879214(+) (ssb) [Xanthomonas axonopodis pv. commiphoreae strain LMG 26789]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCAATCACGCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTTTTCGGAAAGCTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGGTCTACGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGGATGGGCGGCGATCGCCCGCAGCGCTCGGCGCCGCGTCAGCAGGGCG
GCGGCGGTGGGCAGGGTGGTGGATACGGCGGCGGTGGCGGTGGTCAGGACTATGCGCCGCGCCGTCAGCAGCCGGCCCAG
CAGCAGTCGGCACCGCCGATGGACGATTTCGCAGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.615

100

0.492
  ssb Glaesserella parasuis strain SC1401

45.405

100

0.475
  ssb Neisseria meningitidis MC58

42.473

100

0.446
  ssb Neisseria gonorrhoeae MS11

42.473

100

0.446

Multiple sequence alignment