Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   STER_RS01990 Genome accession   NC_008532
Coordinates   357761..358423 (+) Length   220 a.a.
NCBI ID   WP_011680771.1    Uniprot ID   A0A2A6ZW59
Organism   Streptococcus thermophilus LMD-9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352761..363423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STER_RS01960 (STER_0402) - 353079..353789 (+) 711 WP_011680767.1 ABC transporter ATP-binding protein -
  STER_RS10055 (STER_0403) - 353925..354585 (+) 661 Protein_329 CBS and ACT domain-containing protein -
  STER_RS01975 (STER_0404) cysK 354752..355678 (-) 927 WP_011680768.1 cysteine synthase A -
  STER_RS01980 (STER_0405) - 355780..356406 (-) 627 WP_011680769.1 YigZ family protein -
  STER_RS01985 (STER_0406) comFA 356461..357780 (+) 1320 WP_011680770.1 DEAD/DEAH box helicase Machinery gene
  STER_RS01990 (STER_0407) comFC 357761..358423 (+) 663 WP_011680771.1 ComF family protein Machinery gene
  STER_RS01995 (STER_0408) hpf 358502..359050 (+) 549 WP_011680772.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26051.42 Da        Isoelectric Point: 8.9833

>NTDB_id=303 STER_RS01990 WP_011680771.1 357761..358423(+) (comFC) [Streptococcus thermophilus LMD-9]
MKCLLCNEWIEPVAQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFLKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLEDLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=303 STER_RS01990 WP_011680771.1 357761..358423(+) (comFC) [Streptococcus thermophilus LMD-9]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGCTCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAGAAAGGTATTGAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGAGGATTTAGATGTCAAAGAAGTTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A6ZW59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.495

100

0.459
  comFC/cflB Streptococcus mitis SK321

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae D39

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae R6

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae TIGR4

44.144

100

0.445

Multiple sequence alignment