Detailed information NTG0302953

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: DUN60_RS05325
• Genome accession: NZ_CP031055
• Coordinates: 1194362..1195786 (-)
• Length: 474 a.a.
• NCBI ID: WP_114633384.1
• Uniprot ID: -
• Organism: Vibrio splendidus strain Vibrio sp
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1189362..1200786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DUN60_RS05300	-	1189935..1190588 (+)	654	WP_114633382.1	thiopurine S-methyltransferase	-
DUN60_RS05305	purT	1190697..1191872 (-)	1176	WP_017077980.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
DUN60_RS05310	cdd	1192040..1192927 (-)	888	WP_114633383.1	cytidine deaminase	-
DUN60_RS05315	-	1193285..1193962 (-)	678	WP_012604141.1	LrgB family protein	-
DUN60_RS05320	-	1193965..1194336 (-)	372	WP_004734867.1	CidA/LrgA family protein	-
DUN60_RS05325	sbcB	1194362..1195786 (-)	1425	WP_114633384.1	exodeoxyribonuclease I	Machinery gene
DUN60_RS05330	-	1196824..1197258 (+)	435	WP_004734871.1	DUF4402 domain-containing protein	-
DUN60_RS05335	-	1197311..1197748 (+)	438	WP_004734872.1	DUF4402 domain-containing protein	-
DUN60_RS05340	-	1197745..1198455 (+)	711	WP_017090896.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54581.80 Da
• Isoelectric Point: 4.9120

>NTDB_id=302953 DUN60_RS05325 WP_114633384.1 1194362..1195786(-) (sbcB) [Vibrio splendidus strain Vibrio sp]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPDGINWPPNEEGYP
SFKLEHLSVANGIEHENAHDAMADVVATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFGDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=302953 DUN60_RS05325 WP_114633384.1 1194362..1195786(-) (sbcB) [Vibrio splendidus strain Vibrio sp]
ATGAGTTCAGATAATCAGCCGACCTACTTCTTTTTTGATTACGAAACGTGGGGCGTTAGCCCAGCAAAAGACCGTCCGAG
TCAGTTTGCGGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAGCCTCTGGTTATCTATTGCCAACCTCCTGCTG
ATTACCTCCCTGCGCCTGAAGCTGCGCTGATCACCCGTATCACACCACAGAAAGCGGCTTCACAAGGTCTTCCTGAACCA
GAGTTTATCGCTAAGATCCATGCTGAGTTAGCGAAACCAAACACCACAAGCCTTGGCTACAACAGTATTCGATTCGATGA
TGAGGTAACGCGTTACACTTGTTACCGAAACTTCATCGACCCGTATGCGTGGAGCTGGCAGAACGGTAACTCACGTTGGG
ATCTACTCGATGTAATGCGCGCTGTTCACGCACTGCGCCCTGATGGTATCAACTGGCCACCAAATGAAGAAGGTTACCCA
AGTTTCAAACTGGAACATCTATCGGTGGCAAATGGCATTGAACACGAGAACGCGCACGATGCGATGGCCGATGTTGTTGC
GACCATCGAGTTAGCGAAGAAGCTGAAAGCTGCACAACCTAAGATGTTTGATTACCTCTACAACATGCGTCATAAGCGTA
AGCTGAATGACCTGGTTGATATTGTAAACATGACACCATTGATGCACGTTTCGGGCATGTTTGGCCGTGACTGCAACTAC
ACAAGTTGGATTGTGCCTATGGCTTGGCACCCAACCAATCAAAATGCCGTTATCGTGGTTGATTTAGCCAAAGATCCAAG
CCCACTGTTAGAACTGGACGCTGATGAACTCAGAGACAGACTCTACACCAAACGCAGTGAACTGGGTGAAGACGAGCTAC
CCGTACCAATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTTGCTCCAGCCAAAACGCTGACGGCTGAAAATGCCGAA
ACCATCGGTATTGATCGCCAACAATGCTTGAAGAACTTGGCACTGCTGCGCGAACACCCAGAGATCCGCGAAAAACTGAT
CGGCCTGTACTCACAAGAGCGAGAGTACGAAAAGAGTGATGATGTTGATACACACCTTTACGACGGTTTCTTCTCACCTG
CTGATAAAACAGCGATGAACATCATTCGCGAAACTGACCCAAATAACTTGGCAGCTTTAGATATCACCTTCGGTGATGAA
CGTATTAAACCGTTACTATTCCGTTACCGTGCTCGTCATTTCCCATGGACGCTCGACGAAGCTGAGCAATTGAAATGGGC
GAACCATTGTCGTGAGTTTTATGAGAGCCGTTTAGAAGAGTACATGCTCAACCTTGAAAACCTCGCGCATGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAGGCGGTTTATCAATACGTAGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	75.949	100	0.759