Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   DUN60_RS05210 Genome accession   NZ_CP031055
Coordinates   1173175..1174356 (-) Length   393 a.a.
NCBI ID   WP_114633369.1    Uniprot ID   -
Organism   Vibrio splendidus strain Vibrio sp     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1168175..1179356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUN60_RS05195 - 1168685..1169587 (+) 903 WP_114633366.1 Vmh family MBL fold metallo-hydrolase -
  DUN60_RS05200 - 1169868..1170683 (+) 816 WP_114633367.1 TauD/TfdA family dioxygenase -
  DUN60_RS05205 cqsS 1170939..1172987 (+) 2049 WP_114633368.1 hybrid sensor histidine kinase/response regulator Regulator
  DUN60_RS05210 cqsA 1173175..1174356 (-) 1182 WP_114633369.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  DUN60_RS05215 - 1174673..1176055 (-) 1383 WP_114633370.1 PLP-dependent aminotransferase family protein -
  DUN60_RS05220 - 1176159..1177073 (+) 915 WP_114633371.1 EamA family transporter -
  DUN60_RS05225 - 1177337..1178209 (+) 873 WP_114633372.1 aspartoacylase -
  DUN60_RS05230 - 1178305..1179312 (-) 1008 WP_114633373.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43606.69 Da        Isoelectric Point: 6.1439

>NTDB_id=302952 DUN60_RS05210 WP_114633369.1 1173175..1174356(-) (cqsA) [Vibrio splendidus strain Vibrio sp]
MSDKTKKKPLPSFIEERLNFYIQDLITQNQSQKHLVLGKRPPCNAVVMQSNDYLALSHNKQIQQAHQAAISENDDNVVMS
AIFLQDEESKPAFETELASYVGMESCLLSQSGWAANIGLLQTICPPATPVYIDFFAHMSLWEGIRAAGAIAHPFMHNNMN
HLRKQLERHGSGVIVVDSIYSTIGTIAPLRDIYEMAQEFDCAVVVDESHSLGTHGENGAGLVHALGLTNQVDFITVSLAK
TFAYRAGAILGPKQLSETLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKGSEDKREALFKSAKSLTTGLKRIGFNIRSESQ
IVALECGSETNTERVRDFLEQRDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYNHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=302952 DUN60_RS05210 WP_114633369.1 1173175..1174356(-) (cqsA) [Vibrio splendidus strain Vibrio sp]
ATGAGTGATAAAACCAAAAAAAAACCATTACCTTCCTTTATTGAAGAACGCTTGAACTTCTATATTCAAGACCTGATTAC
CCAGAACCAAAGTCAGAAACACTTGGTGTTGGGTAAACGTCCACCGTGCAACGCCGTTGTCATGCAGAGCAATGATTACC
TAGCCCTGTCGCACAACAAGCAGATCCAACAAGCTCACCAAGCGGCGATCAGTGAAAACGATGACAACGTGGTGATGTCG
GCCATTTTCCTGCAAGATGAAGAGTCTAAACCTGCGTTTGAAACCGAACTCGCAAGCTATGTGGGTATGGAAAGTTGTTT
GCTTTCTCAATCTGGCTGGGCGGCCAACATTGGATTACTTCAAACTATCTGTCCGCCAGCTACGCCTGTGTATATCGACT
TTTTTGCACACATGTCGCTGTGGGAAGGTATTCGCGCGGCTGGTGCAATAGCCCATCCATTTATGCATAACAATATGAAT
CACCTGCGCAAACAGCTAGAGCGCCACGGCTCAGGCGTTATTGTGGTCGATTCGATTTACAGCACCATCGGCACCATCGC
CCCACTACGCGACATCTACGAAATGGCGCAAGAGTTTGATTGTGCCGTTGTCGTTGATGAATCGCATTCACTGGGTACGC
ATGGAGAAAATGGTGCTGGCTTAGTTCACGCATTGGGCCTCACTAACCAAGTCGACTTTATTACCGTTAGCTTGGCTAAA
ACCTTTGCCTATCGTGCAGGTGCTATCCTTGGGCCAAAGCAGCTTTCAGAAACCTTACCTTTTGTCGCGTATCCAGCTAT
TTTCAGCTCGACCGTGTTACCACAAGAGGTGGTTCGTTTAGAGAAAACATTAGAGGTCATAAAAGGTTCAGAAGACAAAC
GAGAAGCCTTATTCAAAAGCGCTAAATCGCTTACTACTGGCCTCAAACGGATTGGCTTTAACATCCGCAGCGAGTCTCAA
ATAGTGGCACTAGAGTGTGGTAGTGAAACAAACACCGAGCGAGTGCGCGACTTCCTTGAACAGCGTGATGTGTTCGGTGC
TGTGTTCTGCCGCCCCGCGACGGGGAAGAACAAGAACATAATCCGATTTTCAGTGAATGCCGACATGACACCACGAGACA
TTGACCATGTGCTCACGGTTTGTCATGAGGCGTACAATCATCCGGAATTAGAGTTCGTGTGA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.44

98.219

0.545

Multiple sequence alignment