Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   DUN60_RS05205 Genome accession   NZ_CP031055
Coordinates   1170939..1172987 (+) Length   682 a.a.
NCBI ID   WP_114633368.1    Uniprot ID   -
Organism   Vibrio splendidus strain Vibrio sp     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1165939..1177987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUN60_RS05185 - 1167085..1167486 (-) 402 WP_054546487.1 ACT domain-containing protein -
  DUN60_RS05190 - 1167615..1168508 (-) 894 WP_054546486.1 LysR family transcriptional regulator -
  DUN60_RS05195 - 1168685..1169587 (+) 903 WP_114633366.1 Vmh family MBL fold metallo-hydrolase -
  DUN60_RS05200 - 1169868..1170683 (+) 816 WP_114633367.1 TauD/TfdA family dioxygenase -
  DUN60_RS05205 cqsS 1170939..1172987 (+) 2049 WP_114633368.1 hybrid sensor histidine kinase/response regulator Regulator
  DUN60_RS05210 cqsA 1173175..1174356 (-) 1182 WP_114633369.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  DUN60_RS05215 - 1174673..1176055 (-) 1383 WP_114633370.1 PLP-dependent aminotransferase family protein -
  DUN60_RS05220 - 1176159..1177073 (+) 915 WP_114633371.1 EamA family transporter -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78364.36 Da        Isoelectric Point: 5.3900

>NTDB_id=302951 DUN60_RS05205 WP_114633368.1 1170939..1172987(+) (cqsS) [Vibrio splendidus strain Vibrio sp]
MNAIRKVYQYAEPNLTLVGWMGFVGFPIYYIVWEFLFPQPYENLMLRLFCSVLFFGIIYRNSVPFEWRKYLPVYYQVAVT
LCLPFFFFYMLLMNNWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGMATLCAWIAQGFYLELTMDWTHVPIFLFIY
LFGNLFYFRNQMEHENKVSLAKSFGAGIAHEMRNPLSGLLTSIDVMQSILPNPKSGDHKGQYALSNEEVIQLREVGDEAM
EIIHSGNETIDLLLTSIDENRVSRSTFKKHSAQAVIEGAIDSFNYKRSADKSAISLDVQSNFDFLGSDTLLKYVMYNLFK
NAFHHRSPEDFHIHVTMCSDELANQIMVTDNGSGISNDVIRRIFQDFYTTGQSGNYGLGLPFCQKVMRSFGGEIKCQSEV
DQWTQFTMTFPSLSSHSVKEIKNELTKLKTVLMVSDQKVLTNKMTEVARFMGFELTVLDVASALKNKEYQFEFDLIFVDM
ESLDLRASCLDRIESLLSFTEARIIYLYEHHPIKRVRNVAFEPIWVETQVWLLNTKATIERLLFDSNYVMPSVSVKPLEA
TNKRTIMVVDDNESLRRFTAMLLEKQGFDVVQTEDGQQALDALDSDDIDLILMDIEMPIMDGVEASRRIRSANKAYSSVP
IIAHTGDSSPVTLEKMESSGMSDFIVKPADKNRLFDKIAHWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=302951 DUN60_RS05205 WP_114633368.1 1170939..1172987(+) (cqsS) [Vibrio splendidus strain Vibrio sp]
ATGAACGCTATTCGTAAAGTTTATCAGTACGCAGAACCAAACCTTACTCTCGTGGGTTGGATGGGCTTTGTCGGCTTCCC
AATTTACTACATAGTGTGGGAGTTCTTGTTCCCTCAACCTTATGAAAACTTAATGCTGCGCTTGTTTTGCTCAGTGTTGT
TTTTCGGCATTATCTATCGCAATAGTGTCCCATTTGAATGGCGAAAATACCTTCCGGTTTATTATCAAGTCGCCGTAACC
CTCTGCTTGCCGTTTTTCTTCTTCTACATGTTACTAATGAATAATTGGTCCAATGTTTGGGTTATGTCATTCATGTCTGC
CATTTTCCTCCATATTTTATTAGTGCACGTGACGAGAGTGATGTTTGCACAAACCTTTGCCGGTATTGGGATGGCGACCT
TGTGCGCTTGGATTGCACAAGGCTTCTACCTAGAACTCACAATGGATTGGACGCATGTGCCAATCTTTTTGTTTATCTAC
TTATTTGGTAACTTGTTCTACTTCCGCAATCAGATGGAACACGAGAATAAGGTGTCGTTGGCGAAATCTTTTGGAGCCGG
TATCGCGCACGAGATGCGAAACCCCCTGAGCGGTTTGTTGACCTCTATTGATGTTATGCAGTCCATATTGCCGAACCCTA
AAAGTGGTGATCACAAAGGGCAATATGCTTTAAGCAACGAAGAAGTCATACAGTTACGTGAAGTGGGCGATGAAGCGATG
GAGATCATTCACTCAGGTAACGAGACGATTGACCTGTTACTGACTTCAATTGATGAAAACCGAGTATCTCGATCTACCTT
CAAGAAGCATTCAGCTCAAGCGGTGATTGAGGGTGCGATAGACAGCTTTAACTACAAGCGTTCAGCCGATAAATCAGCAA
TCTCTTTAGATGTACAGAGTAACTTTGATTTCTTGGGTAGCGACACTCTGTTGAAGTACGTGATGTATAATTTGTTCAAG
AACGCATTCCACCATCGCAGCCCTGAAGATTTTCATATTCATGTCACCATGTGTAGTGATGAATTGGCCAATCAAATAAT
GGTTACCGATAACGGGTCAGGCATCTCAAATGATGTGATTCGACGCATTTTCCAGGACTTTTATACTACTGGCCAATCGG
GTAATTACGGCTTAGGTTTGCCATTTTGTCAGAAGGTAATGCGCTCGTTTGGTGGTGAAATTAAATGTCAGTCTGAAGTG
GATCAATGGACACAGTTCACGATGACTTTTCCGTCTTTGTCTTCCCATTCGGTGAAAGAAATCAAGAATGAACTGACTAA
ACTTAAGACTGTGCTAATGGTGAGTGACCAGAAAGTTCTCACCAATAAAATGACTGAGGTAGCCCGTTTTATGGGGTTTG
AGCTCACGGTGTTGGATGTAGCATCAGCGCTTAAAAATAAAGAATACCAGTTCGAATTCGACTTGATCTTCGTTGACATG
GAGAGCTTGGATTTAAGAGCAAGTTGCCTCGATAGGATTGAATCTTTACTTTCATTCACTGAAGCTCGAATCATCTATTT
GTATGAACATCACCCAATTAAACGTGTCCGAAACGTTGCTTTTGAACCTATTTGGGTGGAAACACAAGTTTGGCTACTGA
ATACCAAGGCGACCATTGAACGCTTACTTTTCGACTCAAACTATGTGATGCCATCAGTTTCTGTAAAACCGTTAGAGGCT
ACCAATAAGCGCACGATCATGGTGGTCGATGATAACGAATCTCTGCGCCGATTTACCGCGATGTTATTGGAAAAACAGGG
TTTTGATGTCGTGCAGACAGAAGATGGACAACAAGCCTTAGACGCGTTGGATAGCGATGATATCGATTTAATTCTGATGG
ATATCGAGATGCCAATCATGGACGGTGTTGAAGCTTCTCGTCGAATTCGAAGCGCTAACAAAGCATACTCTTCAGTGCCA
ATTATTGCTCACACGGGTGACAGTTCTCCTGTGACATTGGAAAAAATGGAATCATCAGGCATGTCAGATTTTATTGTGAA
ACCGGCAGACAAAAATCGACTGTTCGACAAAATTGCTCACTGGATTTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-411)

His Kinase A (phospho-acceptor) domain (HisKA)

(184-257)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.105

100

0.484

Multiple sequence alignment