Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   DUN60_RS06520 Genome accession   NZ_CP031055
Coordinates   1435324..1436835 (-) Length   503 a.a.
NCBI ID   WP_065205220.1    Uniprot ID   -
Organism   Vibrio splendidus strain Vibrio sp     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1430324..1441835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUN60_RS06500 - 1430584..1431720 (-) 1137 WP_114633538.1 glycosyltransferase -
  DUN60_RS06505 - 1431713..1432498 (-) 786 WP_017094511.1 acyltransferase -
  DUN60_RS06510 - 1432591..1433967 (-) 1377 WP_114633539.1 O-antigen ligase family protein -
  DUN60_RS06515 - 1434219..1435343 (-) 1125 WP_114633540.1 glycosyltransferase family 4 protein -
  DUN60_RS06520 luxO 1435324..1436835 (-) 1512 WP_065205220.1 sigma-54 dependent transcriptional regulator Regulator
  DUN60_RS06525 - 1437103..1437507 (-) 405 WP_114633541.1 Hpt domain-containing protein -
  DUN60_RS06530 - 1437815..1439047 (-) 1233 WP_114633542.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  DUN60_RS06535 - 1439040..1439939 (-) 900 WP_054547760.1 proline/glycine betaine ABC transporter permease -
  DUN60_RS06540 - 1440084..1441076 (-) 993 WP_065205217.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 56343.58 Da        Isoelectric Point: 5.6748

>NTDB_id=302954 DUN60_RS06520 WP_065205220.1 1435324..1436835(-) (luxO) [Vibrio splendidus strain Vibrio sp]
MRPKVLLVEDSTSLAVLYKQYVKDEPYDIFHVETGAEAKIFIERHSPQLVILDLKLPDMPGEEVLDWISENEIPTAVIIA
TAHGSVNIAVDLIQRGAEDFLEKPIQADRLKTSVRLHLKRAKLENLVDDMQSKFDRDRFHNFIGSCLPMQAVYKIIDSVA
PTTASVFINGESGTGKEVCAEAIHQESQRNGKPFVAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAAMQAHGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGNREIKVDVRIICATNRDPLVEVEEGRFREDLYYRVHVVPIEMPPLRERGSDI
VTLANHFLKLYAKQDKKKFKSIDKETQNLLKRYVWPGNVRQLQNIIRNIVVLNNETSVTKDMLPPPINKVDAAPTSKSVT
PIRVAAPQAAVVEAPEAKLPPITPEELEQSSVVPANNDPMTPAFTTNEGAIRPMWQIEREAIQHAINHCDGNVLNAAVLL
ELSPSTVYRKKQAWESEDEYNQA

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=302954 DUN60_RS06520 WP_065205220.1 1435324..1436835(-) (luxO) [Vibrio splendidus strain Vibrio sp]
ATGCGCCCTAAGGTATTGTTAGTTGAAGACTCCACCTCACTCGCCGTACTCTACAAGCAGTACGTAAAAGACGAACCCTA
CGATATTTTCCACGTCGAAACCGGCGCAGAAGCTAAGATCTTCATTGAAAGGCACTCTCCACAGCTTGTTATTCTCGATC
TTAAGTTGCCCGACATGCCAGGTGAAGAAGTACTAGATTGGATTAGCGAAAATGAAATACCGACCGCCGTCATTATCGCG
ACAGCACATGGCTCAGTTAATATTGCTGTAGACCTTATCCAACGCGGTGCGGAAGATTTCTTGGAAAAGCCAATTCAAGC
CGATCGACTTAAGACCTCTGTTCGCTTGCATTTGAAACGAGCTAAGCTAGAGAACCTCGTTGATGATATGCAAAGCAAGT
TTGATCGTGACCGCTTTCATAATTTCATTGGCTCTTGCCTACCTATGCAGGCTGTCTATAAGATCATTGATTCGGTGGCG
CCAACCACCGCTAGCGTGTTTATTAACGGCGAAAGTGGTACGGGTAAAGAAGTGTGCGCGGAGGCTATTCATCAGGAGAG
TCAGCGTAACGGTAAGCCCTTCGTTGCCATTAACTGTGGTGCTATCCCTCGAGACCTAATGGAGAGTGAAATCTTCGGTC
ACGTCAAAGGTGCGTTTACCGGTGCGACAACCGACCGTAAAGGCGCGGCGATGCAAGCGCATGGTGGCACCCTATTTCTC
GATGAGCTTTGCGAAATGGAACTGGAGATGCAAAAGAAGCTCCTACGATTTCTGCAAACAGGTACGTTTACTCCACTCGG
TGGTAATCGCGAGATTAAAGTAGATGTCAGAATTATCTGTGCGACCAACCGCGACCCACTGGTTGAGGTCGAAGAAGGAC
GTTTTAGAGAAGACCTTTACTATCGTGTTCACGTTGTGCCTATCGAGATGCCACCACTTCGTGAACGAGGAAGTGACATT
GTGACTTTGGCTAATCACTTTTTGAAATTGTATGCGAAGCAAGACAAGAAGAAGTTCAAATCCATAGACAAAGAAACGCA
GAATCTACTTAAACGTTATGTGTGGCCAGGCAACGTGCGTCAGTTGCAAAACATCATCCGTAACATCGTGGTGTTGAACA
ATGAAACGAGCGTGACCAAAGACATGTTACCGCCTCCAATTAATAAAGTAGACGCGGCTCCAACTTCGAAATCAGTGACA
CCGATTCGAGTAGCGGCGCCCCAAGCTGCTGTTGTGGAAGCACCCGAAGCTAAGTTGCCACCGATTACTCCTGAAGAGTT
GGAGCAATCGTCAGTTGTTCCCGCTAACAACGACCCGATGACGCCCGCATTTACAACAAACGAAGGTGCTATTCGTCCAA
TGTGGCAAATAGAGCGCGAAGCCATTCAACACGCGATCAATCATTGCGATGGGAATGTGCTAAACGCTGCTGTGTTGTTA
GAACTTAGCCCTTCTACCGTTTACCGTAAGAAGCAGGCTTGGGAATCGGAAGATGAGTACAATCAAGCCTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-309)

Bacterial regulatory protein, Fis family (HTH_8)

(454-490)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.489

97.217

0.481

Multiple sequence alignment