Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   DUN60_RS04535 Genome accession   NZ_CP031055
Coordinates   1019936..1020517 (+) Length   193 a.a.
NCBI ID   WP_004734691.1    Uniprot ID   -
Organism   Vibrio splendidus strain Vibrio sp     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1014936..1025517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUN60_RS04515 panP 1015233..1016876 (-) 1644 WP_114633281.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  DUN60_RS04520 - 1016996..1017523 (-) 528 WP_004734688.1 hypothetical protein -
  DUN60_RS04525 - 1017698..1018603 (-) 906 WP_114633282.1 lysine exporter LysO family protein -
  DUN60_RS04530 - 1018658..1019578 (-) 921 WP_004734690.1 HDOD domain-containing protein -
  DUN60_RS04535 tfoX 1019936..1020517 (+) 582 WP_004734691.1 TfoX/Sxy family DNA transformation protein Regulator
  DUN60_RS04540 - 1020678..1021220 (-) 543 WP_114634297.1 hypothetical protein -
  DUN60_RS04545 - 1021470..1021967 (-) 498 WP_114633283.1 response regulator -
  DUN60_RS04550 - 1021960..1023903 (-) 1944 WP_114633284.1 ATP-binding protein -
  DUN60_RS04555 - 1024087..1025349 (+) 1263 WP_114633285.1 DUF945 family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22172.59 Da        Isoelectric Point: 9.3844

>NTDB_id=302950 DUN60_RS04535 WP_004734691.1 1019936..1020517(+) (tfoX) [Vibrio splendidus strain Vibrio sp]
MTETAFINYVNQFGEHQKRSMFGGIGLFQNDAMFALLSEGCLFIRGGKSLDKKLTDLDCEKYRHVKKQTTATVNYYDITD
LFTCEHPELDSIIRTSIDNSIQQRSFKKSSASRRLRDLPNMQLTLERMVKKAGVDDVSMFMQLGAPEVFNKVRKAYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKGCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=302950 DUN60_RS04535 WP_004734691.1 1019936..1020517(+) (tfoX) [Vibrio splendidus strain Vibrio sp]
ATGACCGAGACAGCATTTATTAATTACGTGAATCAATTTGGTGAGCATCAAAAACGTTCTATGTTTGGAGGTATCGGCCT
CTTTCAAAATGACGCTATGTTCGCTTTATTGAGTGAAGGTTGTTTATTCATCAGAGGTGGAAAGTCATTAGATAAAAAAC
TGACGGATCTTGACTGTGAAAAGTATCGTCATGTAAAAAAACAGACAACAGCTACCGTAAATTATTACGATATTACTGAC
CTGTTTACCTGCGAACATCCTGAATTGGATAGTATTATTCGTACTTCAATCGATAATTCAATTCAGCAACGTAGCTTTAA
GAAATCATCCGCTAGCCGTCGATTGAGAGATCTACCAAACATGCAACTTACGTTAGAGCGCATGGTTAAAAAGGCGGGTG
TGGACGATGTTTCAATGTTTATGCAGTTGGGCGCGCCTGAAGTGTTTAATAAGGTTCGCAAAGCGTACGGAAACGATGTT
GACCTAAAACTACTTTGGAAATTTGCGGGTGCAATTGATGGTATTCACTGGAAACTATTACAAGAGCCACGCAAGCAGCA
ATTATTAAAGGGCTGCCACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(9-98)

TfoX C-terminal domain (TfoX_C)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

73.575

100

0.736
  tfoX Vibrio cholerae strain A1552

73.575

100

0.736
  tfoX Vibrio campbellii strain DS40M4

70.466

100

0.705
  tfoX Vibrio parahaemolyticus RIMD 2210633

70.466

100

0.705
  tfoX Aliivibrio fischeri ES114

58.511

97.409

0.57

Multiple sequence alignment